Paraglaciecola sp. T6c: Patl_0418
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Entry
Patl_0418 CDS
T00372
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Patl_0418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pat03019
]
Patl_0418
03009 Ribosome biogenesis [BR:
pat03009
]
Patl_0418
Enzymes [BR:
pat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Patl_0418
Messenger RNA biogenesis [BR:
pat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Patl_0418
Ribosome biogenesis [BR:
pat03009
]
Prokaryotic type
rRNA helicases
Patl_0418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
Helicase_RecD
Cas3-like_C_2
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABG38948
UniProt:
A0A9J9B847
LinkDB
All DBs
Position
complement(492124..493863)
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AA seq
579 aa
AA seq
DB search
MTDTVELTFKDLNLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAA
FALPMLANVDANNSNTQLLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQI
RQLRRGAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPA
ERQTALFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHKLEALTRI
MEVEEFDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDIL
VATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFS
IERATRQSIDPMPIPSISQLNETRLSRFKSSVIEAIGDSSIETLIPIVESIQAETEAAPE
VIMAALAKIAQGDEPLILKEGDRPDLNSAPPRGDRNDRGGRDDRGGRGRERGGDRGGDRP
QRARKSSTPEEGMQRYRIEVGHTHGAKPGNIVGAIANEANISSKNIGAIEIYDNFSTVDL
PKNMPRATQDTLQKTRVAGQRLNMREWSDQPPRRRGKPE
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgactgacactgtcgaattgacttttaaagacctcaacctacctgccgaattgcttcaa
gctttagaaaaagtaggttacgaaaaaccaaccccaatccaagctcaatgtattccgcta
atcatggaaggtcacgatcttcttggtactgcgcaaaccggtacgggtaaaacagcagca
ttcgcattgccaatgcttgcaaacgtggatgctaacaacagcaacactcaattattagtt
ttggcaccgactcgcgaattagcgattcaggtagctgaagcctttcaggtatacgctagt
ttctctcgtaaacttaacgtattacctatttacggtggctcatcttacgacaaccaaatt
cgccaactaagacgtggtgcacaggttgtagtcggcacgcctggtcgtgtaatcgaccac
atcaaaaaaggcacgttgaaattagataaccttaagttcttggtattagacgaagccgac
gaaatgctacgcatgggtttcatcgatgacgttgagtggattttgagccacgcaccagca
gagcgccaaactgcgttgttctcagcgactatgcctgatccaatccgcaaaattactaag
cgttacttgagcgatcctaaacaagttaaaatcgaatctaaagttgctaccgctagcacc
atcaaacagcgttactgccaggtggctggccatcacaaacttgaagcccttacccgtatt
atggaagtggaagagtttgatgcagtgattattttcgtacgtactaaaaccgcaaccatg
gagctttctgagaaattgtctgctcgtggctacgctgttgagcctcttaacggtgacatt
ccgcaaaactcacgtgaacgtactgttgaacgtttgaagcgcggtaaaattgatattctt
gtagcaacagacgttgttgcacgtggccttgacgttgaacgtgtaagtcacgttatcaac
tacgacgtgccttacgatacagaatcttacgttcaccgtattggtcgtactggccgtgct
ggtcgtcaaggtgatgcaatactgttcatctcacatcgtgagaagcgcatgttgttctca
atcgagcgtgctacacgtcaatcgattgatcctatgccaatcccatcaatctctcagcta
aatgaaacgcgtttgagccgcttcaaaagcagcgtgattgaagcgatcggtgacagcagc
attgagacattgatccctatcgttgagtcaattcaagcagaaaccgaagccgcaccagaa
gtgattatggctgcattagctaagattgctcaaggtgacgagccgcttattctgaaagaa
ggcgaccgtcctgacctgaactctgcccctcctcgtggtgacagaaatgaccgtggtggt
cgtgatgatcgcggtggacgtggtcgtgagcgtggcggtgaccgcggtggtgacagacca
caacgtgctcgcaaaagcagtacgccagaagaaggcatgcagcgctaccgtatcgaagta
ggtcatactcatggcgctaagcctggcaacatcgttggcgcgatcgctaatgaagcaaac
atcagcagtaaaaatattggtgctatcgagatttacgataacttcagtaccgttgatttg
ccgaaaaatatgcctcgtgcaacgcaagatacattgcaaaaaacccgtgttgccggtcag
cgtttgaacatgcgtgaatggtcagatcagcctccacgtcgtcgtggtaagcctgaataa
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