Paraglaciecola sp. T6c: Patl_0994
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Entry
Patl_0994 CDS
T00372
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Patl_0994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pat03019
]
Patl_0994
03016 Transfer RNA biogenesis [BR:
pat03016
]
Patl_0994
Enzymes [BR:
pat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Patl_0994
Messenger RNA biogenesis [BR:
pat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Patl_0994
Transfer RNA biogenesis [BR:
pat03016
]
Prokaryotic type
tRNA degradation factors
Patl_0994
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
CSD
OB_RNR_1st
RNase_II_C_S1
DUF7499
Motif
Other DBs
NCBI-ProteinID:
ABG39520
LinkDB
All DBs
Position
1185078..1187510
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AA seq
810 aa
AA seq
DB search
MSDDPFYQREKEKYENPVASREYLLELLTKAKKPLSFLEFCHLLNAEDEDSRIGIQRRLR
AMEREGQIEFNRDKKYAKLKLEELIQGRVIGHRDGFGFLKRDDGEKDLFIHNAQMATVLH
GDIVLVKESGTDNRGRREARIAKIIEPRSEPIVGRYFFENGAGIVIPDDSRINHEISIPA
EYVNGARQGFIVVVEIVQRPRRRVNAIGKVLEVLGEHMAPGMEIDMALRTFDIPHAWPKG
VTKQIADLSEQVPEEAKENRIDLRQLPLVTIDGEDARDFDDAVFCEPLDDGGWQLWVAIA
DVSYYVRPGTALDSEAQNRGNSVYFPEQVIPMLPEVLSNGLCSLNHQVDRLCMVCEMTIS
ANGELAEHQFYEAVMNSKARLTYTKVWDILKDDGQAHPELKNRYAEQVPHLKNLHDMYRT
LKRRRSQRGAIEFETQESKFVFNAQRKIDTVVPVTRNDAHKLIEECMILANVAAAKTLSK
QKAEALYRIHDEPDSDRLSAFLSYLAEVGITHHISKDASPQEFTEVISKIQGRADQELIQ
TMLLRSMKQAVYSHENIGHFGLALEAYAHFTSPIRRYPDLVVHRALKATIDKKQQRKSKT
GGKAYTAEEVDALGEQCSMTERRADDATRDVSDWLKCEFMLDHVGDTFDGVIASVTSFGF
FVRLSEFHIDGLVHISALDNDFYQFDETKQHLVGENSGIVYRLGDPLEVKVAGVNLDERK
IDFVLAKAPPKPRGGKRGTKKSSSTKKGSAKNTSGKESPVSKAGAKAANENDKAGGAKKK
PRTRRSSGKGGAADKPAAKSRRSSSSKRNK
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgatcccttttaccagcgcgagaaagaaaaatacgaaaatccagtagcgagc
cgtgagtatttacttgaattactcaccaaagccaaaaaaccgttgtcctttcttgaattt
tgtcacctattaaatgcagaagatgaagatagccgaattggtattcaacgtcgcttgcgt
gcaatggagcgcgaagggcaaatcgaattcaatcgtgataaaaaatacgccaagcttaag
ttagaagagctaattcaagggcgtgtgattggccaccgtgacggttttggatttttaaag
cgtgatgacggcgaaaaagatctgtttattcacaacgcacaaatggcgacggtactgcac
ggcgacatagtgctggtcaaagaaagcggcaccgataatcgaggccgccgagaagcacgc
atagctaaaattatcgagccgcgcagcgaacccattgttggtcgttacttttttgaaaat
ggtgccggtatcgttattcccgatgacagccgtatcaatcatgaaatcagtattcctgct
gagtatgttaacggtgcccgtcaaggcttcatcgttgttgtagagattgttcaacgccca
agacgtcgcgtgaacgcgattggtaaagtattagaagtgctaggtgagcatatggcaccg
ggcatggaaatcgacatggcactgcgcactttcgatattcctcacgcttggcccaaaggt
gttaccaagcaaattgccgacctcagcgagcaagtacctgaagaagcgaaagaaaataga
atcgatttacgtcaattaccattagtcacgatagatggtgaagacgcacgtgatttcgat
gacgctgtattttgtgaaccgctagatgacggtggttggcagttgtgggtggcgattgct
gatgtaagttattatgtcagaccaggtacggcgcttgatagcgaagcgcaaaaccgtggt
aactcggtttatttcccagagcaggttattcccatgctgcctgaagtactctctaacgga
ttgtgttcattgaaccaccaagtagaccgattatgtatggtctgtgaaatgaccatcagc
gcaaacggagagctcgcagaacaccaattctatgaagctgttatgaactcaaaagcgcgc
cttacttacacaaaagtatgggatatattgaaagatgacggccaggctcatcctgaactg
aaaaatcgctacgcagagcaggtcccacatcttaaaaatttacacgacatgtaccgcacg
ttgaaacgcagacgtagtcagcggggggctattgaatttgaaactcaagaaagtaagttc
gtgttcaatgcgcagcgtaaaatagacaccgttgtgcctgtcacgcgtaatgatgctcac
aaactgatagaagagtgtatgattttggccaacgtagctgcggccaaaaccttaagcaag
caaaaagctgaagccttgtaccgtatacatgatgagccggactcggatcgattaagtgcg
tttttgtcttatttggcagaggtcggaattacccatcacattagcaaagatgcttcgcca
caagaatttactgaggtgatcagcaaaattcagggcagggccgatcaagagctaattcaa
accatgttgctgcgttctatgaagcaagcagtgtacagccatgaaaacattggccacttt
ggtttagcattagaagcttacgcgcatttcacatcacccattcgtcgctaccccgattta
gttgtgcatcgtgctttaaaagccacgatagataaaaagcaacagcgcaaaagtaagact
ggcggtaaagcgtatacagcagaagaggtggatgcattaggcgagcagtgttctatgaca
gagcgacgcgccgacgatgcaacacgcgatgtatccgattggctcaaatgtgaatttatg
ctcgaccatgttggagatacatttgatggcgttattgcatcggtaaccagttttggcttt
ttcgtgcgtttatccgagttccatattgatgggctagtgcatatttctgcattagataat
gacttttatcagtttgatgaaacgaagcagcacttagtcggagaaaattcgggcatagtt
taccgacttggcgatccgcttgaagtgaaggtggctggggtgaatttggatgaacgaaaa
atagactttgtattagccaaagcgccaccaaaaccaagaggtggaaaacgcggaacaaag
aaatcctcttccactaaaaaaggttcagcaaaaaacacctcaggcaaagaaagccctgta
tccaaagccggggccaaagcggcaaatgagaacgacaaagctggtggcgctaaaaagaaa
ccacgcactcgtcgttcgagtggtaaaggaggggcagccgataaaccagcggctaagtca
cgtcgctcttcgtccagtaaaaggaacaaatag
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