Paraglaciecola sp. T6c: Patl_1014
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Entry
Patl_1014 CDS
T00372
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Patl_1014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pat03021
]
Patl_1014
03400 DNA repair and recombination proteins [BR:
pat03400
]
Patl_1014
Enzymes [BR:
pat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Patl_1014
Transcription machinery [BR:
pat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Patl_1014
DNA repair and recombination proteins [BR:
pat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Patl_1014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ABG39540
UniProt:
Q15X48
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All DBs
Position
1199146..1200135
Genome browser
AA seq
329 aa
AA seq
DB search
MSGSVTEFLKPRLVEIDNVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDVIEILLNLKGLAVRLEGKTEATLTLVKSGAGPVLAGDIQHDGD
VEIVNPSHVLCTLTGEAELSMRIKVEMGRGYVPASTRRSSEEDDRPIGRLLVDASFSPVS
RISYNVESARVEQRTDLDKLIIDMETNGTIDPEEAIRRSATILAEQLDAFVELRDMSEPV
EKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPESIAEKD
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggttctgtaactgaattcttaaaaccaaggttagttgaaattgataacgtttcg
cctacacgtgcaaaggtcactttagagcctttggagcgtggttttggtcatacattgggt
aatgcgttacgtcgtattcttttgtcatctatgccaggttgtgcagtgactgaagttgag
atcgacggtgtattacacgagtacagcaccaaagaaggcgttcaagaagacgttatcgaa
atattgcttaaccttaaaggtttggcggtacgtcttgaaggcaaaaccgaagcaacacta
acattagtgaagtccggtgcgggcccagtattagctggagacatccagcatgatggtgat
gttgaaatcgtaaacccaagtcacgttctttgtactttaactggcgaagctgaactcagc
atgcgcattaaagtagaaatgggccgtgggtacgttccagcgtcaactcgtcgctcttct
gaagaagatgatcgcccaattggtcgtttattggttgatgcttcatttagtccagtatca
cgtatttcgtacaacgttgaatctgcgcgtgttgaacaacgcactgatttagacaagtta
attatcgatatggaaaccaatggcactatcgatcccgaagaagcgattcgtcgctcagca
actatattagctgagcaattagacgcattcgttgaacttcgtgatatgtcagagcctgtt
gagaaagaagagaagccggaatttgatccgattcttcttcgcccagttgatgatttagaa
cttacagtacgttcagctaactgccttaaagcagaagcgatacaatatattggtgaccta
gtacaacgcaccgaagttgagttgttaaagactcctaacttaggtaaaaaatctcttact
gagatcaaagatgtactagcttctcgtggactttcactaggtatgcgcttagagaactgg
ccaccagaaagcatcgcagaaaaagattaa
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