Paraglaciecola sp. T6c: Patl_1038
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Entry
Patl_1038 CDS
T00372
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Patl_1038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pat03021
]
Patl_1038
Transcription machinery [BR:
pat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Patl_1038
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CDC45
Motif
Other DBs
NCBI-ProteinID:
ABG39564
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Position
complement(1241650..1243491)
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AA seq
613 aa
AA seq
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MVQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPQDIVDSDQIEDIIRMINDMGIKVFENAP
DSDELLMQETTTDEEVAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINQVQCSVAEYPEAITYLLDQWDMFEAEEIRLSDIIVGFVDPNEADNIAPTATH
IGSELSEEELEDEDDDGDDSDDEDEEEEDTGPDPEEAREKFSELRVQYEKTRDVIASEGR
SHAKSRKEIDELSEIFKEFRLVPKQFDRMVKNMRSMMDRIRVQERIVMKHCVAAAKMPKK
DFIKAFSGNETSTDWLFEILASDAPYVEELKVHQEELERSIGKMNAVEDETGLIIADIKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIVQPLDSATGGSL
KNATQEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEQLRSFLDE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaaagcaagcagtcgcagataaaactcctcattgcaaaaggtaaagaacaaggc
tacttgacctttgccgaagtaaatgatcacctgcctcaagacatagttgactcggatcaa
atcgaagacattatccgcatgatcaacgacatggggatcaaagtgtttgaaaacgctcct
gattccgatgaactattgatgcaagaaaccacgacagatgaagaagtcgcggaagccgcc
gcccaagccctagctacggtagaaagcgagattggtagaacaacagaccctgtgcgtatg
tacatgcgtgagatgggtacggttgagctgttaactcgtgaaggcgaaattgttatcgcc
aagcgcatcgaagaaggtatcaatcaggttcaatgttctgttgcagaataccctgaggca
atcacctacttgcttgatcagtgggacatgttcgaagcggaagaaattcgcttaagtgac
atcattgttggtttcgttgatcctaacgaagcagacaatattgcccctaccgctacccac
attggttctgagttatctgaagaagagttggaagacgaagatgatgatggcgacgatagc
gatgatgaagacgaagaagaagaagatacaggcccagatccagaagaggcccgtgagaag
ttctctgaattacgtgttcaatacgaaaaaacgcgcgatgtaattgcatctgaaggccgt
tctcacgcgaagtcacgcaaagaaattgatgaattaagcgagattttcaaagagttccgc
ttagtgcccaagcagtttgaccgtatggttaaaaacatgcgcagcatgatggatcgtatc
cgtgtgcaagaacgcatcgtgatgaaacactgtgttgctgcggcaaaaatgcctaagaaa
gacttcatcaaagcgttctctggaaacgaaaccagtactgattggttattcgaaattctt
gcttctgacgcgccttatgttgaagagcttaaagtacatcaagaagaactagagcgtagc
atcggtaaaatgaatgccgttgaagacgaaaccggcttgatcattgccgacataaaagac
attaaccgtcgtatgtcaattggtgaagcgaaagcgcgccgtgcgaagaaagaaatggtg
gaagctaacttacgattggttatctcaattgcgaagaagtacaccaaccgtggtttacaa
ttcttggatctgattcaagaaggtaatatcggtttgatgaaagctgttgataaattcgaa
taccgtcgtggttacaagttctcgacttatgctacgtggtggatccgccaagcaatcaca
cgttcgattgcagatcaggcacggactattcgtattcctgtgcacatgattgaaacaatc
aataaattgaaccgtatttctcgtcaaatgttacaagagatgggccgcgaaccaacgcca
gaagaattgtcagagcgcatgttaatgcctgaagacaaaatccgtaaggtgttgaaaatt
gctaaagagcccatttcaatggaaacccctattggcgatgatgaagattcacatttaggt
gatttcattgaagatagcaccattgtgcagcctcttgactctgccactggcggtagcttg
aagaacgccactcaagaagtattagcaggcctaaccgcccgtgaagcgaaagtattgaga
atgcgttttggtatcgacatgaacacggaccacacgcttgaagaagtcggcaagcagttt
gacgttactcgtgagcgtattcgtcaaatcgaagcgaaggcactgcgtaaactacgtcat
ccaagtcgctctgagcagctacgcagcttcttagacgaataa
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