Paraglaciecola sp. T6c: Patl_1603
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Entry
Patl_1603 CDS
T00372
Name
(GenBank) two component, sigma54 specific, transcriptional regulator, Fis family
KO
K07715
two-component system, NtrC family, response regulator GlrR
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat02020
Two-component system
pat02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Patl_1603
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Patl_1603
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
pat02022
]
Patl_1603
Two-component system [BR:
pat02022
]
NtrC family
GlrK-GlrR (amino sugar metabolism)
Patl_1603
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Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
AAA_16
AAA_5
AAA
HTH_8
AAA_19
AAA_2
FleQ
nSTAND6
AAA_30
T2SSE
OKR_DC_1_N
MCM
RsgA_GTPase
nSTAND3
CATRA-C
Motif
Other DBs
NCBI-ProteinID:
ABG40125
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All DBs
Position
1908294..1909643
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AA seq
449 aa
AA seq
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MSKVEASLKPQILLVDDDESLLRLMAIRLEGEGYSVQSAEGGKEALRLMNTQNFDAVLSD
LRMPGLDGLSLFEEIMSLGKDLPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHTELRDL
LAKAVSQSQGSQTSAWREQIITRSMQMEQLLDQAHRVAQRDVSVLVSGASGTGKELLANA
IHKASKRANKPFVAINCGALPENLLESELFGHAKGAFTGAVNEHQGLFREADGGTLFLDE
IGDMPTPLQVKLLRALQEQVIRPVGSSKQIPVDVRIISATHKNLATEMSEGNFREDLYYR
LNVVNLTLPTLRERSEDIPLLARYLLKKSAERHEVRVSRFSDDAMQLLTTELWPGNVRQL
VNVVEQCVALTQTSVIAVHLVEQALSTSEQKWPTLTEARDAFEQSYLLKLLKMTDGNVTR
AAEIAGRNRTDLHKLMKKHDLHSTDFKHD
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaagttgaagcgtcgttaaagccacaaatattactcgtagatgatgacgaaagt
ttactacggttaatggctattcgcttagaaggtgaaggctatagtgtgcaaagtgcagaa
ggcggcaaagaagcgctgcgcttgatgaatacccaaaattttgatgcggtattaagcgac
cttagaatgccaggattagatggcttaagtttatttgaagaaattatgtccttgggcaaa
gacctgccggttattttgatgacagcccacggcacaatccaagatgcggttgaggcgacc
caaagaggcgtttttggtttccttaccaagccgattgatcatactgagttgcgtgacctg
ctagccaaagcggtgagtcaaagccaaggctcgcaaacaagtgcttggcgtgagcaaatt
atcacgcgttccatgcaaatggagcagttgttggatcaagcccaccgagtggcgcaacgt
gacgtcagtgtgttggtcagcggggcaagtggaacgggtaaagagttattggccaatgcc
attcacaaagccagtaaaagggcgaataaaccgtttgtggcgatcaactgtggtgctttg
cctgaaaacctacttgagtctgaacttttcgggcacgccaaaggggcctttactggtgct
gtgaatgaacatcaaggcttgtttcgtgaagcagatggtgggacgttgtttttagatgaa
attggtgacatgccaacgccgttgcaagttaaattacttcgcgcattgcaagagcaagtt
attcgtcctgtgggtagcagcaaacaaatacctgttgatgttcgcattatttcggcgact
cacaaaaatcttgcaacagaaatgagtgaagggaatttccgtgaggatctgtattatcgt
ttaaacgttgtgaatttaacgctgccaacgctgcgtgaacgctcagaagatattcccttg
ctggctcgttacctacttaagaaaagcgccgagcgccatgaagtgcgcgtcagccgtttt
tctgatgacgccatgcaactgttgaccactgaattgtggccaggcaatgtgcgccagtta
gtcaatgtggttgagcagtgcgttgcattaacacaaacatcagtgattgcagtgcacctt
gtggaacaagcgctgtcgacgtctgagcaaaaatggccaacgctcaccgaagcgcgagat
gcttttgaacagagttatctgctaaaactgctcaaaatgaccgacgggaatgttactcgg
gccgctgaaattgccggtcgtaatcgcaccgatttacacaagttgatgaagaaacatgat
ttgcactctactgattttaagcatgactaa
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