Paraglaciecola sp. T6c: Patl_1725
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Entry
Patl_1725 CDS
T00372
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Patl_1725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pat03400
]
Patl_1725
Enzymes [BR:
pat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Patl_1725
DNA repair and recombination proteins [BR:
pat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Patl_1725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABG40246
UniProt:
A0A9J9ESU0
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All DBs
Position
complement(2062829..2066311)
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AA seq
1160 aa
AA seq
DB search
MTASIFNPTLAKGQRDAIHWGNLHGSSLAMSIANAAGKTKGPILLVTADTPSAMKLEKEL
SFFLQGKNVQVQLFPDWETLPYDNFSPHQDIISQRLETLYRLTQAENCVFIVPVNTLMLR
MAPTDYLSKYLLFLKVNQTLDIDAFRLGLERAGYQHVNQVMGHSEFSIRGSIIDLFPMGS
QQPFRIDLFDNDVDSIRYFDPDSQRSGDKIDEIKLLPAREFPTDQDGIKLFRQQYLEKFD
ANNSKESIYYQVGKGMMPGGIEYYLPLFFEQSATLFDYLHPDTLLMMHGDLAKACDFFWT
DVNERYEQLRYNLSRPLMAPADLFLRNEELFGALKQWPRITIEQNAKEQKAGVTNYDTRT
IGDIAIKSQNKVPWATLKQRVADWQRSGSKVLFSAESQGRRESLLDLLGKAGIKPKAFEH
LDAFQKSKELVGITIGLAEHSFVLFEDNKELAFITETELLGHKISQRRLRDKRQATDENA
VIRNLAELAIGQPVVHLDHGVGRYLGLQTLDAGGITTEYLTIEYAKEAKLYVPVSALHLI
SRYSGGDLEKAPLHNLGTETWSKAKQKAAERVRDVAAQLLDVYARRAAKPGYSYKIAWDE
YQAFSDSFPFEETLDQQQAINAVIQDMGSSNAMDRLVCGDVGFGKTEVAMRAAFIAANQG
KQVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFGSAKDQKGVMAGLDDGKVDIVVG
THKLLQSDVKFDDLGLVIIDEEHRFGVRQKEKFKALRSDVDILTLTATPIPRTLNMALSG
MRDLSIIATPPAKRLAIKTFVNQRSKELIREAIMREILRGGQVYFLHNEVDSIERTADEI
AEMVPEARIAIGHGQMRERELEKVMGDFYHQRHNVLVCTTIIETGIDVPSANTIIMDRAD
HLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAKKRLDAISSLEDLGAGFALATHD
LEIRGAGELLGDDQTGQITTVGFTLYMEMLEQAVEALKEGKEPSLDTALANQTEIELRLP
ALFPEDYISDVNTRLSLYKKLASCKNERQINEVQIELIDRFGLLPDAAKNLVQISQMKLV
AKKVGINKVEANNAGGAIEFSDKTQIDPSFIIKLIQSQPRIYRLEGANKLKFNVPTQSAS
DRLQLILDMLNEFSQQLRAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaagtatttttaatccgactttggccaaaggccaacgagatgcaattcactgg
ggcaatttacacggcagtagtttggcaatgtctattgccaacgctgcgggcaagaccaaa
ggccctattttgctggtaacggcagataccccaagcgccatgaaattagaaaaagaactc
agctttttcttacaaggtaaaaatgtgcaagtgcagctttttcccgattgggaaaccctg
ccctacgacaacttttcccctcatcaagatatcatttcacagcgtttagaaaccttatac
cgcctcactcaggccgagaactgtgtcttcattgtgccggttaataccttgatgctgcgc
atggcaccaacagattacctcagcaagtatttgttgtttttaaaggtcaatcaaacctta
gacatagacgcgttccgtttagggttagagcgcgctggctaccaacatgtcaatcaggtg
atgggccacagtgagttttcgattcgcggtagcattatcgatttattccccatgggcagt
cagcagccgtttcgtatcgacttattcgataatgacgtcgacagcattcgttatttcgac
cccgacagccaacgctcaggggataaaattgacgaaattaagctgctaccggcgcgtgag
tttcctactgatcaagacggcatcaaactgtttcgtcagcagtacttagaaaaattcgac
gccaataattctaaagagtctatctattaccaagtcggtaaaggcatgatgcctggcggc
attgaatactacttgccgctgttttttgagcaaagcgccaccctgtttgattaccttcac
ccagacaccttactcatgatgcacggcgatttagccaaggcctgtgacttcttctggact
gatgtgaacgagcgctacgagcaactgcgttataacctcagtcgcccgctgatggccccc
gcagatttatttttgcgcaatgaagaactcttcggcgcgttaaagcagtggccacggatc
accattgagcaaaatgccaaggagcaaaaagccggcgtcaccaattacgacacccgcacg
attggtgatatcgcgataaaatcacaaaacaaagtgccctgggcaacgcttaagcagcgg
gttgctgattggcaaagaagcggcagtaaagtgctgtttagcgcggaatctcagggacgc
cgtgaaagcctgctcgatttattaggtaaagcgggcatcaaacccaaagcgtttgaacac
ctagatgcatttcaaaaaagcaaagagctagtaggtattaccattggcttggccgaacac
agtttcgtgctctttgaagacaacaaagaactggcgtttattaccgaaaccgaattgctc
ggccataagataagtcagcgccgtctgcgtgataaacgccaagccactgacgaaaacgcc
gttattcgcaacttggctgaactggccattggccagcctgtggtgcatttagatcacggc
gtgggtcgctacctcggcttacaaacattagatgctggcgggatcaccacagaatacctc
accattgaatacgccaaagaagccaagttatatgtgccggtatccgcgctgcatttgatc
agccgctacagtggtggtgatttagaaaaagcccctctgcacaatctaggcaccgagacc
tggagcaaagccaagcaaaaagccgccgagcgcgtgcgagacgtggccgcacaattactt
gacgtatacgctaggcgcgcagctaagcccggttactcttataaaatagcctgggacgaa
taccaagctttcagcgacagtttcccctttgaagaaaccttagatcagcaacaagccatc
aacgctgttattcaagatatgggtagcagcaacgccatggacagactcgtgtgtggtgat
gtgggctttggtaaaaccgaagtcgctatgcgcgctgcctttatcgcagcgaatcaaggt
aaacaagtggccatcttggtccccaccactttgcttgcccagcaacattatgaaaacttc
aaagacagattcgctgattggccgtttaagatagaagtaatgtcacgttttggcagtgcc
aaagaccaaaaaggtgtcatggccggactcgacgatggcaaagtggatattgtagtgggc
acccataaactgctgcaaagtgatgtgaaatttgatgacttgggcttagttattatcgat
gaagagcaccgatttggcgtacgccaaaaagagaaatttaaagccctgcgctcagacgta
gacattttgactttgaccgccacgcccataccgagaacgcttaacatggcgctttccggc
atgcgcgacttgtcaattatagcgacgccgccagccaaacgtttggcgatcaagaccttt
gtgaaccaacgtagcaaagagcttatccgcgaagccatcatgcgggaaattctgcgcggt
ggtcaggtgtactttctgcacaacgaagtagatagtatcgagcgtaccgctgacgaaatt
gccgaaatggtgcctgaagcacgtattgccataggccatggccaaatgcgcgagcgggaa
cttgaaaaggtcatgggggatttctaccaccagcgacacaatgtgttggtgtgtaccacc
atcattgaaaccggtatcgatgtgccatcagcgaataccattatcatggacagagcggat
catcttggccttgctcagttacaccaattgcgtggccgtgtgggtcgttctcatcaccaa
gcttacgcctatttattaacgccgcaccctaaacgcatgaccaaagacgccaaaaaacgt
ctggatgccatatcctcactggaagatttaggcgcaggttttgcccttgctactcacgat
ctagaaatacgcggtgccggtgaattgctcggggacgaccaaaccggtcaaatcaccacg
gtcggctttactttatatatggaaatgttagagcaagcggtggaagcgttaaaagaaggc
aaagagccatcacttgacaccgcccttgctaatcaaacggaaatcgaattgcgcttacct
gcactattcccagaagattacatcagtgatgtgaacacccgtttgtctttgtataaaaag
ctcgctagctgcaaaaacgagagacaaatcaatgaagtgcaaattgaattgatcgaccgc
tttggcttactgcctgatgccgctaagaatttagtgcaaatcagtcaaatgaaattagtg
gccaagaaagtcggtattaataaggttgaagccaacaatgcagggggtgcgattgagttt
tcagataaaacccaaatcgacccaagctttatcattaaactgatacaatcacagccgcgc
atttatcgacttgaaggcgccaacaaattgaaattcaatgtaccaacacaatccgccagc
gataggctgcaacttatcctggatatgttaaatgagtttagccagcaattaagagccgct
taa
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