Paraglaciecola sp. T6c: Patl_1756
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Entry
Patl_1756 CDS
T00372
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Patl_1756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pat03400
]
Patl_1756
Enzymes [BR:
pat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Patl_1756
DNA repair and recombination proteins [BR:
pat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Patl_1756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ABG40277
UniProt:
A0A9J9ESC0
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All DBs
Position
2100863..2104363
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AA seq
1166 aa
AA seq
DB search
MLHLVQSNKMESLAAYLIGWLGESKSSLDDIFSPDVVLVQSPGMAQWLKIEIAQALGISA
NIDFPLPSSYIWQLYKGHVNDLPEQSAFTKDNMTWKLMSILPEMSDRTEFASIAQYLDDQ
QPLKLYQLCQKIADIYDQYLVYRPEWILAWEQGENNVADTDVSAQPWQPILWRALVEYAK
ELDESPYHRANLHTRLMAELEDTKSSKDELKPLFVFGLSAMPVQQLEIFSALAKSRDVII
FWFNPSAHYWGDIVDNKQVLQAKLQSLLAQASEDAQSGLSGMDDYLLVGNPLLASWGKQG
RDYQDMILGLEVELHDAFIEQEPESLLEHMQHEVLALTHRGAIEPLPAQELLTNGEEYPK
IPLAEDDMTLQVHACHSAVRELEVLHDQLLHLFADHPELHPGDVIVMMPDVASYAPIIDG
VFGGTDKALHIPYAISDRNAQQESPLLNSFIQLMSLHQSRIGLSDVLALCEVPAVQRKFD
ITPEEFDLLSVWLADAGVRWGWDGQDKTRWALPNEPQNTWLFGLQRLLAGYAMGGESMFD
DAHEPIAPYEHIEGQHVVALGKFYLFSRELGNALAFCQSAASLHAKIKGALSLIEQLYLP
DDDDQTYVLQLRQSLEQMTVHEHQFSGEIVHDVFLAELEQSLSSKGVGQRFLAGYVNFCT
LMPMRSVPFKVVCLLGLNDGDYPRQVVPVGFDLMRIGKGRRGDRSRRLDDRYLFLEAILS
ARKRLYLSFQGFSAKDNSPRSPSILLSELLEYTQQTFCLAGDESLETKTCADNLAKHIYH
EHALQPFNPVYFATKRDAHEEEPLPSAMASFQTPWLALAQQLTDGSVHSDKEVDFCPAPL
FSLPELAQVTEVELDELLIFFSNPAKAFFSQRWQTRLTRVYDVQSDDEPFELDALSRYVL
NERFVTTQQQDWTTRLRAEGKLPTGNIADISLQPIRKQSRALIDALVALIGGPLDEVPPT
RAEVNFELSYLLDISPVPASELNANTNSSTQNSVSATSTQRIQITGWVDNLYGGNLVLWR
PGKVKGNNVLQLWLTWLALCANGSVAKHQRAYYIGVEDKEPFSIGAVDKDEAKTQLAIFI
RYWRLGQLQVLHFYPKTAYEWLSVGDEAKALMKAKNAFYGSYFAKGEGEEPHIRRVCPDL
NQHFCAFSEVSHALFDPLFDALGEAS
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgttgcatctggttcagtctaataaaatggaaagtctcgccgcttatctcatcgggtgg
ttaggcgagagtaaaagcagcctagatgatatcttttcccccgacgtggtgttagtgcaa
agccccggtatggcacagtggctaaaaatagaaattgcccaggcattgggtatttctgcc
aatatcgatttcccgttaccctcaagctatatctggcaattatacaaaggccacgtaaac
gatttacctgagcagtctgcctttactaaagacaacatgacgtggaagctcatgagcata
ttgcctgaaatgagtgatagaactgaatttgccagcattgcccagtatttagatgatcaa
cagccgcttaagctttatcagttatgccaaaaaatagccgatatttacgatcaatatttg
gtctatcgcccagagtggatcctggcttgggaacaaggcgaaaataacgtagccgatacc
gacgtgtccgcccaaccttggcaacctattttatggcgagctttggttgaatatgccaaa
gagctggatgagtctccttatcatagggcgaatttgcatacacgcttaatggccgagctt
gaggacactaaaagcagcaaagatgagctgaaacccttgtttgtgtttggcctgtcagcg
atgcctgtgcaacaacttgaaattttctccgcgttagcgaaaagtcgcgacgtgatcatc
ttttggtttaaccccagcgcccattactggggcgatatagtagacaacaaacaagtactg
caagccaaattgcaaagcttactcgctcaagcaagtgaagatgcccaaagtggcttaagc
ggtatggatgattacctattggttggcaacccgttgctcgcctcttggggcaagcaaggg
cgagactaccaagacatgatcttgggcttagaggttgaattgcatgatgcgtttatcgag
caagagcccgaaagcttgcttgaacatatgcagcacgaagtattggcgttaactcatcgc
ggggcgatagagccactacccgcacaagagctgctaacaaacggtgaagaataccctaag
atacctctggctgaagacgacatgaccttgcaagtacatgcgtgtcattcagcagtacgt
gagctcgaagtcttacatgaccagctattgcacctttttgctgatcaccctgagctacac
ccgggggatgtgattgtaatgatgccggacgtggcaagctatgcaccgatcattgatggt
gtatttggcggcacagacaaagcgctgcatattccttatgctatttccgatcgcaacgcc
cagcaagagtcgcctctactcaatagctttattcaactgatgtcgctacatcaaagccgg
atcggtttatccgatgtactggccttgtgtgaagtgccagcagtacagcgaaaatttgat
atcaccccagaggaatttgacttattaagtgtatggctagctgatgcaggtgtgcgttgg
ggctgggatggccaagataaaacacgctgggcattgcccaacgaaccgcaaaatacctgg
ttgtttggtttacaacgtttgttggccggctatgccatgggcggtgaaagcatgtttgat
gatgctcatgagccaattgcaccttatgaacacatcgaaggccagcacgttgtggcttta
ggtaagttttatttgttcagtcgcgagcttggcaacgcgttagccttttgccaaagtgcg
gccagtttgcatgcgaaaatcaaaggtgctctgtcactcattgaacagctgtatttgcct
gacgatgatgaccaaacgtatgtgctacaactgcgccaatcactggagcaaatgacagta
cacgagcatcaattcagtggtgaaattgtgcatgatgttttcctcgctgagctagagcaa
agtttatccagcaaaggcgtaggccagcgctttttagccggttatgtgaatttttgtacc
ttaatgcccatgcgcagtgtgccgtttaaagtggtgtgcttgcttggtttaaacgatggt
gattacccaaggcaagtggtgccggttggtttcgatttaatgcgcatcggcaaagggcgt
aggggagaccgctctcgcaggctagatgacagatacctgtttttagaggccattttatct
gcgcgtaagcgactgtatttaagttttcagggctttagcgctaaagataactcgccgcgt
agcccatcaattttgcttagcgagttacttgagtacacacaacaaaccttctgcttggca
ggtgatgagagcttagaaaccaaaacatgcgccgataatttagcaaagcatatttatcat
gagcatgcattgcagccatttaatcctgtgtattttgcgactaaacgcgatgcccacgaa
gaggaaccgttgccaagcgcgatggctagttttcaaactccttggctggcattagcgcag
cagctgacagatggcagtgtgcacagtgataaagaagtggatttttgtcctgcgccgtta
ttttccttgcctgagcttgctcaagtgacagaggtcgagttagacgaattgttgatattc
tttagcaatcccgcgaaggcgtttttcagccagcgctggcaaacccgtttgacccgtgtt
tatgacgttcaaagtgacgatgagccgtttgagcttgatgcgttgtcgcgctatgtgttg
aacgagcgttttgtcaccacgcagcaacaggattggacaacgcgtttacgggcagagggt
aaattgcccacaggaaatattgccgacataagtttgcagcccattcgtaaacaatcccga
gcgttaattgatgcgttggtggcattgattggcgggccgctggatgaggtgccgcccacg
cgagcagaagttaactttgagttgagctacttgttggatatttcacccgtcccggcaagt
gaactaaatgccaacacgaactcatcaacacaaaattcggtgtcagcaacaagtactcaa
cgtattcagataaccggctgggtagacaatctatacggtggcaatttggtgctatggcga
ccgggcaaagtcaaaggcaataacgtattgcaactatggctaacctggttagccctgtgt
gctaacggcagtgtggcaaaacaccaacgcgcctattacattggcgtggaggataaagag
ccctttagcattggtgctgtcgataaagatgaagcgaaaacccaactggcgatattcata
cgttattggcgattaggccagctgcaggttttacacttttatcctaaaaccgcttacgaa
tggcttagtgtcggtgatgaagcaaaagcactgatgaaggcgaaaaacgctttttatggc
agctatttcgccaaaggagaaggggaagagccacatattcgccgggtttgcccagatcta
aaccagcacttctgtgcattcagtgaagtcagccatgctttatttgacccgctgtttgac
gcattgggagaggcctcatga
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