Paraglaciecola sp. T6c: Patl_1758
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Entry
Patl_1758 CDS
T00372
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Patl_1758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pat03400
]
Patl_1758
Enzymes [BR:
pat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Patl_1758
DNA repair and recombination proteins [BR:
pat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Patl_1758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
SH3_13
Helicase_RecD
SLFN-g3_helicase
UvrD_C
AAA_22
UvrD-helicase
AAA_28
PhoH
Herpes_Helicase
AAA_16
Siva
nSTAND3
T2SSE
AAA_12
CbiA
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ABG40279
UniProt:
A0A9J9B983
LinkDB
All DBs
Position
2108316..2110529
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AA seq
737 aa
AA seq
DB search
MVSKLMIKNDVSTPQSQQTQVQASPEPPTTASILQSLLSVGRIRPLDVAFAEFIMLHERN
KLAVNTAGIHALGLLAAYLSSRLGEQDSCLNLDGFYQPFLPFYRFDSAPVLMSILEASSC
VSVVEEPRFNQASDAVAGSDTRSDTGNNTSSHDRYSSAQHLPAQQLSAKQLHTHQAQEHQ
SQSKPLILQGHELYMQRYWQYEVQLAEKINSMTGRTSTLDIEQGRALLGQLFVSAPDDVG
DERDLNDVNRQSGHGHAQREPEIDWQKVAVCLAASQSVSVITGGPGTGKTTTVIRLMALL
QGLARHKGKKLQIKLAAPTGKAAARLSQSISAAMDKLPDALKPDLPSQCSTIHRLLGSIP
NSPYFRFNQQHPLHVDVLIVDEASMVDLPLMSKLFAALPRHAKIVLLGDKDQLASVEAGS
VLSDICSAALNFSPTVFNQSPPYSDQALGVVKDLCQIELNINTLNKAPISNSLALLHKSY
RFSEKSGIGRLARAINMGRLANAKALFSDDVYQDVVWQTSDDPKALVNRLLPDYQRYFER
VRQVCARGTLSTQGIEVFALLQQQQVLCAQKEASWGVKQMNVLIESELNKHGAIELGRDF
YIGRPVMLKQNDHSLGLFNGDIGIAMPDEENEGLMKVWFVTEQNTLRGVLPSRLPPHDTV
YAMTIHKSQGSEFDHVYLCLPRIETRSQARLLSRELLYTGLTRAKKSFNLYSDEQALSIS
VARRCQRGSGLAKRLLP
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggtaagcaaattgatgataaaaaatgatgtatcaaccccacagagtcagcaaacacaa
gttcaggcatcaccggagccgcccacgactgccagtattctacaaagcttgttgagtgta
ggtcgaattcgcccattggacgtggcatttgctgagtttattatgcttcacgagcgtaat
aaattggcggtaaacaccgctggcattcacgcgctgggtttactcgctgcttatctcagc
agccgattgggcgagcaagatagctgcctcaatctcgatggattttatcagccattttta
cccttttatcgtttcgattctgcgcctgtgcttatgtctattttagaggcatctagctgc
gtttcggtagttgaagagccgcgctttaatcaagcatctgatgctgtggccggttcagat
acccgttctgatacaggtaacaatacttcatcgcatgatcgttattcttcggcccagcat
ttaccggcccagcagttatcggccaagcagttacacactcatcaggcgcaggaacatcag
tctcaaagtaagcctttgattttacaggggcatgaactttacatgcagcgttattggcag
tacgaagtgcaactggcagaaaaaataaacagcatgacagggcgcacgagtaccttagat
attgaacagggcagagcattgctagggcaattgtttgtttcagcacccgatgatgtaggt
gatgaaagagaccttaatgatgtaaaccgtcaaagtggtcatggccacgcccagcgggag
cctgaaatagattggcaaaaagtggcggtgtgtcttgcggcgagccaaagcgtgagtgtg
atcaccggtggaccagggacagggaaaacaaccactgtgatccggttgatggctctttta
cagggcttggcgcgacataaaggcaaaaaactgcaaattaaactggctgcgccaacagga
aaagccgctgcgcgtttgagccagtctatcagtgccgccatggacaaactaccggacgcc
ttaaagcctgatttacctagtcagtgcagcactattcataggttattgggcagtattcca
aatagcccttattttcgctttaaccagcaacaccccttgcacgtcgatgtgctgatagtg
gatgaagcgtccatggttgatttacccttaatgagtaagctatttgcggctttgcctagg
catgcaaagattgttttattaggtgataaagaccaactcgcttcggtagaggcgggcagt
gtgctgtctgatatctgttctgcggcattgaatttttcgcccactgtcttcaatcaatcc
ccgccatacagtgatcaagcacttggtgtggtaaaagacctgtgccagattgagttaaac
atcaataccctaaataaggcgccgattagcaatagccttgccttgctgcacaagagttat
cgtttcagtgagaaaagtggtattggccgcttagcgcgggctattaacatggggcgattg
gcgaatgccaaagcattattttcagatgatgtttaccaagatgtagtatggcaaaccagt
gatgatccaaaagccttggtgaatagactgctgccggattaccaacgatatttcgagcgc
gtaaggcaggtctgcgcccgaggaacccttagcacgcagggtattgaggtctttgcgtta
ttacagcaacaacaagtcttgtgcgcgcaaaaagaggcgagttggggcgtaaagcaaatg
aatgtcttgattgagtctgagctgaataaacacggagccattgaactaggtcgagatttc
tatattggccggcccgttatgcttaagcaaaacgaccatagtttaggcttgtttaatggt
gatattggtattgccatgcctgacgaggaaaacgaaggtctgatgaaagtgtggtttgtt
actgagcaaaacaccttgcgtggggtgttgcccagtcggttacctccccatgatacggtt
tacgccatgacgatacacaaaagccaagggtctgagtttgatcatgtttatttgtgcttg
ccacgcattgaaacgcgctctcaagcgagattgctcagccgagagctgctgtacactggc
cttacgcgggcgaagaaatcgttcaacttgtatagtgacgagcaggccttgtcgatcagt
gtggcaaggcgttgtcagcgagggagtgggctagctaagcgtttactcccgtaa
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