Paraglaciecola sp. T6c: Patl_2134
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Entry
Patl_2134 CDS
T00372
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Patl_2134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pat03019
]
Patl_2134
03009 Ribosome biogenesis [BR:
pat03009
]
Patl_2134
Enzymes [BR:
pat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Patl_2134
Messenger RNA biogenesis [BR:
pat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Patl_2134
Ribosome biogenesis [BR:
pat03009
]
Prokaryotic type
rRNA processing factors
Patl_2134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABG40652
LinkDB
All DBs
Position
2580531..2583743
Genome browser
AA seq
1070 aa
AA seq
DB search
MSFIRGDRYTTESIRMKRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGT
ITRVEPSLEAAFVDYGAERHGFLPLKEIARTYFPQGYKFEGRPNIKDVIKEGQEVIIQID
KEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTDLKQALSNLTLPDGMG
LIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRPAPFLIHQESNVIVRAIRDYLRRD
IGEILIDKTSIYEQAMKHIELVRPDFANRVKLYRGDVPLFSHYQIESQIESAFQREVRLP
SGGSIVIDPTEALTSIDINSARATKGSDIEETAFNTNLEAADEIARQLRLRDLGGLVVID
FIDMTPVRHQREVENRMKDAVRHDRARVQLGRISRFGLLEMSRQRLRPSLGDSAHNVCPR
CSGHGTVRGTESLALSVLRIMEEESIKDNTGQIEAQLPVNVATYLLNEKRGAVAGVEKRH
KVQLVIIPNPNMETPHYNVARRRPDDAIHDMSYNVELMKNEDTEADKAVTATPVKEQPML
QSFVSPAKAAAVQPETPKKADVESVSLLSKIASWLKSLFAPAPQPEPEPEVKPQRKPQQR
RNRNNPRRSKQGDNRSDNRDDNRSSSKDDNRSDNRDGNEKPNNRKPRRNDNRKPRNDNKS
PKELTNTEQKKDQKPAAPQKEVKEHKVAERRKRRDNRRSVRVDDSKEQTAKAKTHTSNAD
IAATNNHNAQAAVEVDSKVAAVIEQTATQDTPATAETQAPVAVSAQDIESPKKSKTKAEE
KRAQESSHETHEDPAKPESMDNTGNDKGENTTQRTRSRRSPRHIRAAGQKRRKDEEAQAT
QVTDNEQSAKQDELQFDAPQAEVAPVQTEQAIKENAVPVTDTVSEVAISADVTQQAPAQG
DLLTQPEDTISKGEEVAEAPEVTAVQSIDEQPVIANDTSVENNAPVDNAKVETAAPKVDA
VAIAPEADEVIVQTIPSAPEKREEKSKPTNKPKAKKAVSKSIQVSASDTKARASHPMATP
ASVEHEFNTLNIGSLSDDARPSVNASGRSAAMVAASTRSGAPATRPASQD
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcatccgtggcgatcggtacaccaccgagtcaataagaatgaaaagaatgtta
atcaatgcaacgcagcaagaagaattgcgtgttgccctcgtcgatggtcaaaagctttac
gatttagacattgaaagccctggtcacgaacagaaaaaagccaatatatataaaggtaca
ataacccgcgtagagcctagtctagaagcagctttcgtggattacggcgcagagcgtcac
gggttcctacctcttaaagaaatcgcccgcacctattttcctcaaggttataaatttgaa
ggccgtccgaatattaaagacgtcatcaaagaaggccaggaagttattattcaaatcgat
aaagaagagcgaggccagaaaggcgctgcgttaaccacctttatcagtttggcaggtagc
tacctagtattgatgcctaataacccaagagccggtggtatctctcgtcgcatcgaaggt
gatgaacgtacggatcttaaacaagccctaagcaaccttacgttacctgatggaatgggg
ttaattgttcgtaccgctggtgttggtaaatcagctgaagaattacaatgggatttgagt
gttttattaacccattggaccgctatttctgaagcggcggattctcgccctgctcctttc
ctaattcaccaagaaagcaatgttattgtacgcgcaattcgcgactacctgcgtcgtgat
attggcgaaatactgattgataaaaccagtatttacgagcaagccatgaagcacatcgag
ttggttcgccctgatttcgcgaatcgtgtgaagctatatcgtggtgatgtgcctttattc
agccattatcaaattgaaagccaaattgaatctgcttttcagcgtgaagtgcgcttgcca
tcaggtggctcaatcgtaattgacccaaccgaagcccttacctcaattgatattaactct
gcccgcgctaccaaaggcagtgatatcgaagagactgcatttaataccaaccttgaagcc
gctgatgaaattgcccgtcagttacgtttgcgtgatttaggtggtttggtggtcattgac
tttattgacatgacgcctgtacgtcaccaacgtgaagtggaaaaccgcatgaaagacgcg
gtaagacacgaccgtgctcgagtgcaattgggtcgcatttctcgttttggtttacttgaa
atgtcacgtcaacgcttacgcccatcactaggagactctgcccacaatgtgtgccctcgt
tgtagtggtcacggtaccgtgcgtgggactgaatcgttagcattatcagtactgcgtatc
atggaagaggaaagcattaaggacaacacagggcaaatcgaagcccagctacctgttaat
gtggccacttacctgttgaatgaaaaacgcggcgcggttgctggcgttgaaaaacgtcat
aaagtgcaattggtcattattccaaatccgaacatggaaacccctcactacaacgttgct
cgtcgtcgacccgatgatgctattcatgacatgagctataacgttgagttaatgaaaaac
gaagacaccgaagcagataaagccgtaacggccacacctgttaaagaacaacctatgctc
cagagcttcgtctcgcctgctaaggctgcagctgttcaacctgaaacacccaaaaaggct
gatgttgaaagcgtgtcgttgctctcaaaaattgctagttggttgaagtcgttattcgcg
ccagcgccacaacctgagccagagcctgaagttaaacctcagcgtaagccgcaacaacgt
cgcaatagaaacaatcctcgccgcagtaagcaaggtgacaatcgttcagataatcgcgat
gacaaccgctcttcaagcaaggacgacaatcgttcagacaaccgcgatggcaatgaaaag
ccgaataatcgtaagcctcgtcgcaatgataatcgtaaacctcgaaacgataacaagtcg
ccaaaagagctaactaacactgagcagaagaaagatcaaaagccagcagctcctcaaaaa
gaagtaaaagagcacaaggttgctgagcgtcgcaaacgtcgtgataacagacgtagcgtg
cgtgtagatgatagtaaagagcaaacagctaaggctaaaactcacactagcaatgctgat
atcgctgcaaccaacaatcataacgctcaagctgctgttgaagtagacagcaaagttgcc
gcagtcattgagcaaaccgctacacaggacactcctgctaccgcggaaactcaggctcct
gttgcagtatctgcacaagatattgaatcaccgaaaaagtctaagacgaaggcggaagag
aagcgcgctcaagagtcttctcacgagacccatgaagacccagctaaaccagagtcaatg
gataacaccggtaacgataaaggtgaaaacacgactcagcgtacacgcagtcgtcgttca
cctcgtcacattcgtgctgcaggtcaaaagcgtcgtaaagatgaggaagctcaagcaaca
caggtgaccgataacgagcaaagcgctaagcaggatgagttacaatttgatgcaccacag
gctgaagtagcgccagtgcaaactgaacaagccatcaaagaaaatgctgtacctgtaacg
gatacagtttctgaggttgctatcagtgctgatgtgactcaacaagcaccggctcaaggc
gacttgttaactcaaccagaagacactatttccaaaggtgaagaagtcgctgaagcgcct
gaggtcacggcagttcaatctattgatgagcaacctgtcatcgcaaacgatactagcgtg
gaaaataacgcacctgtcgacaacgcaaaggttgaaactgcagcacctaaagtagacgcg
gttgcaatcgcccctgaagcagatgaagtcattgtgcaaacgataccgtcagctccagaa
aagcgtgaagagaaatctaaacctacgaataagccaaaagcgaaaaaagcggtgtcaaaa
tcaattcaggttagcgctagcgatactaaggctcgtgcttcacacccaatggctacgcca
gccagtgttgagcatgagttcaacacgttaaacattggttcgctaagtgatgatgcacga
ccgtctgtaaatgcttctggaagatcagctgctatggtggctgcatcaactcgttccggg
gcaccggctacgagacccgcatcacaagactaa
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