Paraglaciecola sp. T6c: Patl_2135
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Entry
Patl_2135 CDS
T00372
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Patl_2135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pat03019
]
Patl_2135
Enzymes [BR:
pat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Patl_2135
Messenger RNA biogenesis [BR:
pat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Patl_2135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABG40653
UniProt:
A0A9J9BB69
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All DBs
Position
2583926..2585233
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AA seq
435 aa
AA seq
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MSFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL
ELLNRGTHARGNQARALVLTPTRELAAQVAASVVDYGKDLPLRSAVVFGGVGINPQMIKL
RKGVDILVATPGRLLDLYNQNAVRFDDLEILVLDEADRMLDMGFIHDIKKVLKLLPTKRQ
NLLFSATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQFVCPVDKNQKTPALIRMIKD
NDWQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVAT
DIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLADIER
FTKQIIPRKGIEGFEPVHALPESRLDSRPIKPKKPKKPRVQHRDGQRSGDNARGHHSGNR
RGNGPKNASPRRSAS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgccgatttaggcttatcccccgcaattttgtctgccgttacagcgaaaggc
tacacagacccatctccaattcaagcacaagccatacctgccatattagaaggcaaggac
atcatggcagcagcacaaaccggtacaggtaaaacagcgggctttactctgcctttactc
gaattgctgaatcgtggaacacatgcacgtggaaaccaagctcgtgcattagtgttaact
cctacgcgtgaacttgcagcgcaagtcgctgccagtgtggttgactatggcaaggatctt
ccattgcgctcagctgttgtgtttggtggtgttggcatcaacccacagatgatcaagttg
cgcaaaggcgtcgatattctagtcgccacaccggggcgcttgcttgacctgtataaccag
aatgcggttagatttgacgatttagaaattttggtgctggatgaagcggaccgtatgcta
gatatgggctttattcacgacatcaaaaaggtgctaaagctgctaccaacgaaacgtcaa
aacttacttttttcagccaccttttcagatgatatacgtgcattagcgaaagggcttgtg
aataacccggtcgaagtatctgtttccccgcctaatacaacagtagaagccgtggaacag
tttgtgtgccccgttgataagaatcaaaagacacccgctttgattcgcatgattaaagac
aatgattggcaacaagtgttggtatttagccgcactaaacatggtgcgaatcggatcgcc
aagcagcttgaagcgcgtggtattacctcagcggctattcacggtaacaaaagtcaaggc
gctcgtacaaaagcgctagccgagtttaaaagcggtaaagtgcgtgcattagtggcgacc
gatattgctgctcgtggtctagatatcagtcaattaccccaggtagtcaactatgaccta
cccaatgtagcagaagattacgttcaccgtatcggtcgaacaggccgtgctggtgcaagt
ggacaagctatctcacttgtcaccgcggatgagttttccttgctggctgatattgaacgt
tttactaagcaaatcattccacgcaaggggattgaagggtttgagcctgttcatgcatta
cctgaatcaagattagattcgcgccctattaaacctaaaaagcctaaaaaacctcgagtt
cagcaccgagatggtcaacgttctggtgataatgctcgtgggcaccactctggtaaccgt
cggggtaatgggcctaaaaatgccagccctcgccgctcagcgtcttaa
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