Paraglaciecola sp. T6c: Patl_2438
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Entry
Patl_2438 CDS
T00372
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Patl_2438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pat03019
]
Patl_2438
Enzymes [BR:
pat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Patl_2438
Messenger RNA biogenesis [BR:
pat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Patl_2438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABG40954
LinkDB
All DBs
Position
complement(2964439..2965815)
Genome browser
AA seq
458 aa
AA seq
DB search
MSFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLL
QRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYGGVRIEPQIAQL
QEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQ
TLLFSATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIEQARKSAALIQLIQQ
HRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVLVAT
DIAARGIDVSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQSLER
YLDQHLKPSTLVGFAPKDQVTKSWSANKANTRVNSAEKPTSRNMENTKHVKGKPPAAKLN
IDDEDDELYGNFEADPHTSSSRKQHKGSAGGAKRSRRK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaggcattaggcttgcgtgatgagctcattcacgccattgctacacaaggt
tactcggtcgccacagacattcaacgtgaagcaataccccttgtgttagctcaacatgac
ctgttagccgtagcccaaaccggtacagggaaaacggcggcgtttaccttgcccttattg
caacgtttagccgcgaaacaaagcaccaaggtacagggtgtgcgaagcttgattgttacc
ccaactcgggaattagcagcgcaagtagccatcagtgttgaaatttacagtactcagttg
aatattcgcagctttgcggtttacggcggcgttagaatcgagccgcaaatagcgcaattg
caagagggcgtagacgtgctgattgccacacctggccgtttacttgatttgtatgaacag
cgggctttgcactttgaaaacctagagatactcgtgtttgatgaggccgatcgtatgctg
gatttaggctttattgatgacgtaaagcgcattcaatcgctgttgcctgttaagcgtcaa
acgctgttgttttcagctactttttcaaaacagattaaacactttgcgagggaaatgctg
aatgctccaaagacgattgaagtcagcgccgtgaatagtacagtggatttagtcgcgcaa
acattccacccgatagagcaggcgcgaaaaagcgccgcgcttatccaacttattcaacag
cacagatggtcgcaaacactagtgtttatccgcactaagcgaacggctgacgcactagtg
actgaacttgaagatgctggtattgctgctgcatctattcatgccaaccgaacacaacat
gcacgtacccaagccttaaatgcctttaaggccggtgaaatacaggttttggttgccacc
gatatcgcagctaggggcattgatgttagccagttaccctgcgttgttaattatgacctg
ccgtacgtacctgaggattacgtgcatcgtattgggcgaacaggacgagcaggaaataca
gggacggcgatttctcttttcagcccagatgagatctcgcagcttcaatcccttgagcgc
tatttagatcagcatctaaagccttctactttggttggttttgcgccaaaagaccaagtg
acaaagtcatggtcagccaacaaagccaacacacgcgttaacagcgctgaaaaacccacc
tcaaggaatatggaaaatacgaaacatgtgaagggcaaaccccctgcagccaagttaaac
attgatgatgaagatgatgaactgtatgggaatttcgaagctgacccgcatacttcgagt
tcacgaaaacagcacaaaggtagtgcagggggagccaaacgaagtcgcagaaaatag
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