Paraglaciecola sp. T6c: Patl_2803
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Entry
Patl_2803 CDS
T00372
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pat
Paraglaciecola sp. T6c
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pat03016
]
Patl_2803
Enzymes [BR:
pat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Patl_2803
Transfer RNA biogenesis [BR:
pat03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Patl_2803
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ABG41314
UniProt:
A0A9J9BAY8
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Position
complement(3402199..3403401)
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AA seq
400 aa
AA seq
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MLAFLFVWKHVQYISITTDETLNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQIYDGQ
QIALIDPLEISDFTALKAILTDENIVKVLHSCSEDIETFICALDIVPRPIFDSQFAAAIT
GMGPSLGYAKLVEVMLDIQVDKGESRTDWLARPLSPKQCQYAAYDVLYLFQLYPTLCDKT
LAQGRQAWVFAEMENLTRKKLSQVPYELLYLNIKNNWHVTGKSLYVLQQLTAWRAKEAQQ
RDLALNFVVREANLVEVAKRLPASKNALHQISGLTPQEIRINGQAMLDIVAAAEHVDESA
YPQPVERLVDFSRFKKVAAAVRQVCVQTAEKLGVPVELIGSKKQINQLIKWCWFLDDDTR
AQGLLPDLLEGWRGEHLQAALAKVDGLNIAQSISEDSTHA
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
ttgctggcttttttatttgtttggaaacacgtgcaatatatttcaattaccacagatgaa
acgttgaacgcatactgcgctcaactggcaaaagcccaagcgattgccgtagatacagag
tttgtgcgaacacgcactttgtatccacaactcggtttaattcagatttacgatgggcag
caaatcgcgcttatcgatccactggaaatcagcgatttcactgcgcttaaagcgattttg
accgacgaaaatatcgttaaagtgttgcactcgtgttcagaagacatcgaaacctttatt
tgtgctcttgatatcgttcctcgtcctatctttgacagtcaattcgctgctgctattacc
ggcatgggaccgtctttagggtatgctaagttggtagaggtgatgctagatattcaggtc
gataaaggagagtcgcgcacagattggcttgccagacctttatcgcctaagcagtgtcaa
tacgcggcttatgatgtgttgtatttgtttcagctttatcccacgttgtgtgataaaacg
cttgctcaaggtcgccaagcttgggtgtttgccgaaatggaaaacttaacgcgcaaaaag
ctgagtcaagttccctacgaattactctacttaaatataaagaataactggcatgtaacc
ggcaaatccctgtatgtgttacagcaattaaccgcttggagggccaaagaagcgcagcag
cgtgacttagccttgaactttgtagttcgtgaagcaaatttggtggaggtagcgaaacgt
cttccggcaagtaaaaacgcgctgcatcaaatcagtggattaacccctcaagaaattcgt
attaacggtcaagcaatgcttgatatcgtagccgccgcagagcatgtggatgaatcagct
tacccccagccagtcgaacgcttagtcgatttttcacgctttaagaaggtcgctgcagca
gtgcgccaagtctgcgtgcaaacagcagaaaaactgggggtgccggttgaacttataggc
tcaaaaaagcaaatcaatcagttgataaagtggtgttggttccttgacgacgatacgcgt
gcgcaaggtttgttgccagacttattagagggctggcgcggtgagcatttgcaggctgca
ctggcgaaggtcgatggtttaaatatagcccaatcaatcagtgaggactcaacccatgct
taa
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