Paraglaciecola sp. T6c: Patl_4073
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Entry
Patl_4073 CDS
T00372
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat00300
Lysine biosynthesis
pat00470
D-Amino acid metabolism
pat01100
Metabolic pathways
pat01110
Biosynthesis of secondary metabolites
pat01120
Microbial metabolism in diverse environments
pat01230
Biosynthesis of amino acids
Module
pat_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Patl_4073
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Patl_4073
Enzymes [BR:
pat01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Patl_4073
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Glyco_hydro_101
Motif
Other DBs
NCBI-ProteinID:
ABG42572
UniProt:
A0A9J9ETR4
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All DBs
Position
4897152..4898399
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AA seq
415 aa
AA seq
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MDFFGYNNKKLYAEDVSLHDIAQTHGTPCYVYSKATIERHWLAFDKAAGAHPHLVCYAVK
ANSNLGVLSVLAKLGSGFDIVSGGELLRVLKAGGDPTKVVFSGVGKTPEEIALGLQHNIK
CFNVESPAELERISQVAVAENKIAPISIRVNPDVDAKTHPYISTGLKANKFGIEREQAVE
VYRHAASLPNLEIKGIDCHIGSQLTEIAPFVDALDKLLVLIDELAENGITLAHLDVGGGL
GVTYKDETPPHPDEYTQAIAQRMQGREDLQLIFEPGRAIMANAGVLLTKVEFLKQGAEKN
FAIVDAAMNDLIRPALYSAWQSIIPLDTSLTRDSAVYDVVGPICETGDFIGKERELAIDA
GDYLAVRSAGAYGFVMASNYNSRCKAAEIMVDKDQVMVVRERETLEDLWRGESVL
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggatttttttggctacaacaataaaaaactctatgcagaagatgtatcgctgcacgac
atagcccaaactcacggcaccccatgttatgtttattcaaaagcgacaatagagcgtcac
tggttagcatttgataaagcagctggtgcccacccacatttggtttgctatgcagtgaaa
gccaactcaaatttaggcgtgttaagcgtgcttgctaagctcggctctggctttgatatt
gtatccggtggcgaacttttacgcgtacttaaagcgggcggtgacccaaccaaagtggtg
ttttcaggtgtgggaaaaacgcctgaagagattgcattaggcttacagcacaacatcaag
tgttttaatgtcgaatccccagcagagctagagcgcatcagccaagtggctgttgctgaa
aacaaaattgcaccgatttcaatccgcgtaaacccagatgttgacgcgaaaacccatcca
tatatttctaccggcttgaaagccaataagttcggtattgagcgtgagcaagcagtagaa
gtgtatcgccacgctgcgtccttaccgaatcttgagatcaaaggaatagattgccacata
ggctcgcaattaactgaaattgcgccctttgttgatgccctggataaactgttggttctt
attgatgagcttgccgaaaatggcattacattggcgcatttagatgtaggcggtggctta
ggcgtaacgtataaagatgaaacgcctcctcatcctgatgagtacacccaagcaatcgcg
cagcgcatgcaagggcgtgaagatttacagctcatctttgaaccgggccgcgccattatg
gccaatgccggtgtgctactgaccaaggttgagttcttaaaacaaggggctgaaaagaac
tttgcgattgttgatgccgctatgaatgatttaattcgcccggcattatactcagcttgg
caaagcatcattccacttgatacgtctttgacgcgtgacagtgcggtttatgatgttgtt
gggcccatttgcgagacaggcgatttcattggaaaagagcgtgaattggcgatcgatgcg
ggcgattacctcgcggtacgcagcgcgggtgcttatgggtttgtcatggcgtccaattac
aacagtcgctgtaaggccgctgaaatcatggtcgacaaggaccaggtaatggttgttcgt
gaacgagaaacccttgaagacttgtggcgtggtgaaagcgtactgtaa
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