KEGG   Paraglaciecola sp. T6c: Patl_4221
Entry
Patl_4221         CDS       T00372                                 
Name
(GenBank) DEAD/DEAH box helicase-like protein
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
pat  Paraglaciecola sp. T6c
Pathway
pat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Patl_4221
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pat03019]
    Patl_4221
Enzymes [BR:pat01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Patl_4221
Messenger RNA biogenesis [BR:pat03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Patl_4221
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C AAA_22
Other DBs
NCBI-ProteinID: ABG42720
UniProt: Q15N18
LinkDB
Position
complement(5082757..5084022)
AA seq 421 aa
MQTTHLTETHFADLPINEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKT
IAFLVATFHYLLSNPQPTKKQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEG
YQSQREKLEEGVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLF
NRMPKPTERLSMLFSATLSYRVQELAYEHMDNPTHVQVEPERKTGTRIKEELFYPSDEDK
MALLLSLMEEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFT
SGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISFACER
YALNLPAIETYIEHAIPVTEYQADALLRDVTPPKPRHKKRMQNGRNPQKRQSSGSRNRRK
P
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcaaacaactcatttaaccgaaacacatttcgcggacttgccaatcaatgagcaagtc
gttaaggcgttatccgccgcaaactttagtcactgcacgcccattcaagcgttaagcttg
ccccctctattagaagggaatgacatagcaggtcaagcgcaaaccggaaccggtaaaact
atcgcgttcttggtggcaacttttcattacttgctaagtaatccgcagcccactaaaaaa
caaccaagagccattattatggcgccaaccagagagttggcggttcagatctttaacgat
gctgaactgctaagtcaacacactggtttgtctctcggtttgatttatgggggcgagggt
tatcaaagtcaacgggaaaagctggaagaaggtgtagatattattatcggcactaccggc
aggatcattgactactacaagcagaacattttttcgttagccggtattcaagtcgctgta
cttgatgaagcggaccgtatgttcgatttaggctttattaaagatattcgttatcttttc
aatcgcatgcctaaaccgacagagcgtttaagcatgttgttctcggcgacgttgtcgtac
cgagtacaagagctagcttatgagcacatggataaccccactcacgtgcaagttgagccc
gaacgcaaaaccggcacgcgcatcaaagaagagctcttttatccttctgatgaagataaa
atggccttgctacttagtttgatggaagaagaatggccggataaagccattgtttttgcg
aatactaagcacagctgtgagaaagttgccgactggctacaagcagatggtcatcgagtg
ggtctattaagcggtgatgttcctcagaacaagcgcttaaaaatccttgaagatttcacg
tctggcaagctagatatactggttgctaccgatgtggccgctcgaggcttgcacattcct
atggttagtcacgtgtttaactatgacttaccagatgatgctgaagattacgtacatcgt
atcggccgcaccggtcgtgctggtcaaagcggtagctcaatcagctttgcttgtgaacgt
tacgcgttaaacttgccagcgattgaaacctacattgagcatgctattccggtaacagaa
tatcaagctgatgcactacttcgagatgtgacaccacctaagcctcgccataaaaagcga
atgcagaatggtcgcaaccctcagaagcgccaatcatcaggctcgcgtaaccgcaggaag
ccatga

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