Pseudomonas atacamensis: JWU58_00300
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Entry
JWU58_00300 CDS
T07336
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03030
DNA replication
pata03410
Base excision repair
pata03420
Nucleotide excision repair
pata03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JWU58_00300 (polA)
03410 Base excision repair
JWU58_00300 (polA)
03420 Nucleotide excision repair
JWU58_00300 (polA)
03440 Homologous recombination
JWU58_00300 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pata03032
]
JWU58_00300 (polA)
03400 DNA repair and recombination proteins [BR:
pata03400
]
JWU58_00300 (polA)
Enzymes [BR:
pata01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JWU58_00300 (polA)
DNA replication proteins [BR:
pata03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JWU58_00300 (polA)
DNA repair and recombination proteins [BR:
pata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
JWU58_00300 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JWU58_00300 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QSL87762
LinkDB
All DBs
Position
56498..59302
Genome browser
AA seq
934 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVDGVEADDVIGTLAR
SSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYANLDIVPTLPIRGAKTLPAKLEEHREM
AFLSYQLATIKVDVPLDIGLEDLQMGQEDPAKLYELYTLLEFKSWLNDLDRDAKRLELSA
AAEPAPAGDLFSAPQAEAPAAPAEAAYETILDQARFDVWLEKLRNAKLIAFDTETTGIDA
QQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDPNKLKVGQHAKF
DMNILANCAIGGDQSEGISVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQD
IAGKGAKQLTFDQIALEQAGPYAAEDADITLRLHQALFDKLSAIPSLASVLTDIEIPLVP
VLARIERQGAFVDAELLGIQSIELGNKMVALEREAFEIAGEEFNLGSPKQLGVILYEKLG
LPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGR
IHTSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIM
AHLSRDEGLMNAFRNNLDVHTATAAEVFKVELDQVTSDQRRSAKAINFGLIYGMGAQKLG
KDIGVDTKTAKAYIDTYFARYPGVREYMERTRAQAADQGYVETFFGRRLYLPEINSNKPQ
ERAAAERTAINAPMQGTAADIIKKAMVAVDNWLATSGLDARVILQVHDELVLEVREDLVE
QVSAEIRTHMSEAAKLDVPLLVEVGVGNNWDEAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcgtcttacctgtaccgcgcctttcat
gcactgccgccactgaccacgtccaaaggcctgccgaccggtgcggtcaaaggcgtgctg
aacatgctcaagagtctgcgcaaacagtacccggacagccccttcgccgtggtgttcgac
gccaagggcggaacatttcgcgatgagatgtacgccgaatacaaggccaaccggccaagc
atgcccgatgacatgcgcgtgcagatcgagccgctgcaccagagcgtgatcgccctcggc
ttcccgctcctgtgcgtcgacggcgtcgaggccgacgacgtgatcggcaccctcgcccgc
agtagcgcagcggcggatcgcccggtgatcatctccaccggtgacaaggacatggcgcaa
ctggtcgatggccacattaccttggtcaacaccatgtccggtagctcgatggatgtggag
ggcgttaaggagaaatttggcgtcgcaccggagcagatcatcgattatctggcgctgatg
ggcgattcgtccgacaacatcccgggcgtgccgggcatcggcccgaagacggcgtccggc
ctgctggttggcgtcaacggcggtctgaccgagctgtacgccaacctcgacatcgtgccg
accctgccgatccgtggcgcaaaaaccttgccggccaagctcgaagagcaccgggagatg
gctttcctgtcctatcaactggcgaccatcaaggtcgatgtgccgctggatatcggtctc
gaggatctgcagatgggccaggaggatccggccaaactctacgagctgtacaccctgctg
gaattcaagagctggctcaatgatctggatcgcgatgccaagcgtctggaactgagcgcg
gcggccgaacctgcgccggcgggcgatctgttcagcgccccgcaagccgaggcacctgct
gcccctgccgaggccgcgtacgaaaccatcctcgatcaggcccgcttcgacgtctggctg
gaaaaactgcgcaacgccaaactgatcgccttcgacaccgaaaccactggcatcgacgcg
cagcaggcgcaactggttggcctgtcgttcgccgtacaggccaacgaagccgcgtacatc
ccgctgacccattcctacatcggcgtgccggagcagctggatcgcgacaccgtgctgcgc
gcactcaagccgattctggaagacccgaacaaactcaaggtcggccagcacgccaagttc
gacatgaacattctggccaactgcgccattggcggcgatcagagtgaaggcatcagcgtg
cgcggcatcgccttcgacaccatgcttgagtcctacgtactcaactccaccgcaacccgc
catgacatggacagcctcgcgcagaaatacctcgaccacaccacggtgagcttccaggac
atcgccggcaaaggtgccaagcagctgaccttcgaccagatcgccctggaacaggccggg
ccgtacgccgctgaagacgccgacatcaccctgcgcctgcatcaggccctgttcgacaag
ctcagcgcgattccgagcctggccagcgtgctgaccgacattgagatcccgctggtgcca
gtgctggcgcgcatcgaacgccagggtgcgtttgtcgatgccgagttgctgggcattcag
agcattgagctgggcaacaaaatggtcgcgctggagcgtgaagccttcgaaatcgccggg
gaagaattcaacctcggctcgccgaagcagctgggcgtgattctttatgaaaagctcggc
ctgccggtgctgaagaaaaccgccaagggccagccgtccaccgctgaagaagtgttggcg
aaactcgccgaagacgatcaccgcttgccgaaggtgctgatggagcaccgctcgatgagc
aagttgaaaagcacctacaccgatcgcctgccggagcagatcaacccgcgcaccgggcgc
atccacacctcgtatcaccaggctgtggcttcgaccgggcgcctctcctccagtgatccg
aacctgcagaacattccggtgcgcactgccgaaggccgacgcattcgtcaggcgttcgtc
gcgcccaaaggctacaaactgctggcggcggactattcgcagatcgaactgcggatcatg
gcgcacctgtcccgtgacgaaggcctgatgaacgccttccgcaacaatctcgacgtgcac
actgcaaccgctgccgaagtattcaaggtcgagcttgatcaagtgacctccgaccagcgt
cgcagcgccaaggcgatcaacttcggtctgatctacggcatgggcgcgcagaagctcggc
aaggatatcggcgtcgacaccaagaccgccaaggcttacatcgacacctacttcgcccgt
tatccaggcgtgcgcgaatacatggagcgtacccgcgcgcaagcggcggatcagggttac
gtcgaaactttcttcggccgtcgcctgtacttgccggagatcaactcgaacaagccgcag
gaacgcgctgcggcagaacgcacggcgatcaacgcgccgatgcagggcacggcagcggac
atcatcaagaaagccatggtggctgtggataactggctggcgacgtcgggtctggacgcg
cgggtcatcctgcaagtgcacgacgaactggtgctggaggttcgcgaggatctggtcgag
caggtcagcgccgaaattcgtacgcacatgagcgaagcggcgaaactggatgtgccgctg
ctagtggaagttggcgtgggcaacaactgggatgaggcgcactga
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