Pseudomonas atacamensis: JWU58_00900
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Entry
JWU58_00900 CDS
T07336
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03420
Nucleotide excision repair
pata03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JWU58_00900 (uvrD)
03430 Mismatch repair
JWU58_00900 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pata03400
]
JWU58_00900 (uvrD)
Enzymes [BR:
pata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWU58_00900 (uvrD)
DNA repair and recombination proteins [BR:
pata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JWU58_00900 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JWU58_00900 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSL87880
LinkDB
All DBs
Position
complement(189477..191660)
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQIENASPHSIL
SVTFTNKAAAEMRHRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRGIYEAYE
AACLRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLGK
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFPDSETIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGDGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHSDVSMWEAMRLLVANKGLTGRAASALGAFIELIENLAAKCAEMPLH
LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARNFENTEEDEELTPLAAFLGHA
SLEAGDTQADEHEDSVQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGNQ
SMSGSSLFSGSEIPETGFVLGQAVRHSIFGEGVILNFEGSGAQARVQVNFSEGSKWLMLG
YAKLEAI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttctgctgaactccctcaacgatgcccaacgccaggccgta
gcagcccccgttggccgtcagttggtcctggccggcgccggttccggtaaaacccgagtg
ctggtgcaccgtatcgcctggttgatccagatcgaaaacgcctcgcctcactccatcctg
tcggtgaccttcaccaacaaggccgctgccgagatgcgccatcgcatcgagcagttgctg
ggcatcaacccggccggcatgtgggtcggcaccttccacggcctcgcgcaccgcttgctg
cgggcgcactggcaggaagcgggcctgagccagaccttccagattctcgacagcgatgac
cagcaacgtctggtcaagcgggtgatccgcgagctgggcctggacgagcaacgctggcca
gcgcgtcaggcgcagtggttcatcaacggccagaaagacgaaggtctgcggccgcaacac
attcaggccagcggcgacctgttcctggccaccatgcgcggcatctacgaagcctacgag
gcggcgtgcctgcgggctggcgtgatcgatttctccgaactgctgctgcgcgcgctcgat
ctgtggcgcgatcaccccggcctgctggcgcactaccaaaagcgcttccggcacattctg
gtcgacgagttccaggacaccaacgccgtgcagtacgcctggttgcgcctgctcggcaag
ggcggcgacagcctgatggtggtcggcgacgacgaccagtcgatttacggctggcgcggg
gcgaagatcgagaacatccatcagtactcttccgacttcccggactccgagacgattcgt
ctggagcagaactaccgctccaccgccgggatcctcaaagccgccaacgcgctgatcgcc
aacaacaccgggcgtctcggcaaagagctgtggaccgacggcggcgacggcgaagcgatc
aacctgtacgccgcgttcaacgagcatgacgaagcgcgctacgtggtagaaaccatcgaa
agcgcgctgaaaaccggtctggcccgtagcgatatcgccattctgtaccgttccaacgcc
cagtcgcgggtgcttgaagaagccctgctgcgcgagcggatcccgtaccgcatctatggc
ggacagcgcttcttcgaacgcgcggaaatcaagaacgccatggcgtacctgcgtttgctt
gagggtcgcggcaacgacgcggcgctggagcgagtgatcaacgtaccggcgcggggcatc
ggcgagaaaaccgtcgaagcgattcgcgagcatgcgcgacacagcgacgtatcgatgtgg
gaagcgatgcgcctactggtggccaacaaaggcctgaccggtcgcgccgcgagtgcgctc
ggtgcgttcatcgaactgatcgagaacctcgctgccaagtgcgccgagatgccgctgcac
ctgatgacgcaaaccgtcatcgagcagtccggtctgatcgcttatcacgaagcggaaaaa
ggtgagaaaggccaggcccgggtggaaaaccttgaggaactggtcagcgccgcacgcaac
ttcgagaacaccgaagaggacgaagaactgacgccactggcggccttcctcggccacgct
tcgctggaggccggcgacactcaggccgacgagcacgaagacagcgttcagctgatgacc
ctgcacagcgccaaaggcctggaattcccttacgtgttcctcgtgggcatggaagaaggc
ctgttcccgcacaaaatgagcctggaagaaccggggcgtcttgaagaggaacggcgtctg
gcttacgtcggtatcacccgggcgatgcagaatctggtcatgacctacgcggaaacccgg
cgcctgtacggcagcgaaacctacaacaaggtgtcgcgtttcgtccgcgaagtgccgaaa
ggcctgattcaggaagtgcgcctgtccaatagcgtcagccgaccgttcggcggcaaccag
tcgatgagcggcagcagcctgttcagcggcagcgagattccggaaaccggttttgtgctc
ggtcaggccgtacgtcactcgatcttcggcgagggcgtgatcctcaacttcgaaggctcc
ggcgcccaggcccgggtgcaggtgaacttcagcgaaggcagcaagtggctgatgctcggc
tatgccaagctggaagcgatctaa
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