Pseudomonas atacamensis: JWU58_02655
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Entry
JWU58_02655 CDS
T07336
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWU58_02655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pata03019
]
JWU58_02655
Enzymes [BR:
pata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWU58_02655
Messenger RNA biogenesis [BR:
pata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWU58_02655
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QSL88216
LinkDB
All DBs
Position
complement(571873..573735)
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AA seq
620 aa
AA seq
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MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSTIEAEKPEARERPDIRNPRNSRGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPSREQRPSQPPRAAADRAPDEFLDDDIDN
FGNRVDYVPKAAPAGGRGRRPGAPAQGAGAPRGGQPQGRQNGPRNSNGSSTGTPPAKRSG
PRNGAPRDGQGRRDESAPRNRRPARDDQPRSEPAVQNPRSNGPKIMHKESKADRFPTPEQ
LDQLPSRPRGEKPALLTRNR
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgtgccatcgaagatgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtggcggctcagacaggtaccggtaaaaccggcggtttcgccctcccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtgctggtcctgaccccgacccgcgaactcgcggcccaggtgcacgagagcttcaag
atctacgcccgtgacctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccatgtcccgtggcgtcgacgttctcgtcgcctgcccgggtcgcttg
ctcgacctcgccggccagggcagcgtcgatctgtcccacgtggaaattctcgttctcgac
gaagccgaccgcatgctcgacatgggttttgtgcacgacgtgaagaaagtcctcgcgcgt
ctgccggccaagcgtcagaacctgctgttctcggcgaccttctccaaagacatcaccgac
ctcgccggcaaactgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgaacaacgcgtgttccgcctgccggccagccacaaacgtgcgctgctg
gcgcacctgatcaccgccggcgcgtgggaacaggtgctggtcttcacccgcaccaagcac
ggcgccaaccgtctcgctgaatacctggacaaacacggcctgccggcggtggcgatccac
ggtaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccggcgaagtg
cgcattctggttgcgaccgacatcgccgcccgtggtctggacatcgaccagttgccgcat
gtggtcaacttcgagctgccgaacgtcgatgaagactatgtgcaccgtatcggtcgtacc
ggccgcgccggtcgttccggcgaggcgatctccttggtcgcgccagacgaagagaagctg
ctgaaaagcatcgagcgcatgaccaagcagaagattgccgacggcgatctgatgggcttc
gactccagcaccatcgaagccgagaagccggaagcccgcgagcgtcctgacatccgcaac
ccgcgcaattctcgtggcccacgtggcgacggcccgaatggcggcggcggtggcggcggt
cgcaaggacaaaggcaaagacaagggcaaggaaaagccggccggtgaacgtggcgagcgc
cctgcccgtcagcagaaaccgcgcgaaggcacgccgagccgcgaacagcgcccgagccag
ccaccgcgtgcagcggctgaccgtgccccggacgagttcctcgacgacgatatcgataac
ttcggtaaccgcgttgactacgtgccgaaggccgctcctgccggcggccgtggccgtcgt
ccgggcgcaccggcgcaaggcgcaggcgcaccacgcggtggtcagcctcagggacgccag
aacggtccgcgcaacagcaacggttcgagcaccggcacgccaccggccaaacgcagcggc
ccgcgcaatggcgcaccgcgtgacggtcagggtcgtcgtgacgaatccgcgccgcgcaac
cgccgtccggcccgtgacgatcagccacgcagcgaaccggccgtgcagaatccgcgcagc
aacggtccgaagatcatgcacaaggaatcgaaagccgaccgcttcccgacgcctgagcag
ctcgatcaactgccaagccgcccacgtggcgagaaaccagccttgctgacccgcaatcgc
tga
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