Pseudomonas atacamensis: JWU58_03885 Help Entry JWU58_03885       CDS       T07336                                  Name (GenBank) DEAD/DEAH box helicase   KO K03724   ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] Organism pata  Pseudomonas atacamensis Brite KEGG Orthology (KO) [BR:pata00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pata03400]     JWU58_03885 Enzymes [BR:pata01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      JWU58_03885     5.6.2.6  RNA 3'-5' helicase      JWU58_03885 DNA repair and recombination proteins [BR:pata03400]  Prokaryotic type   Other factors with a suspected DNA repair function    DNA helicases     JWU58_03885 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD_assoc DEAD WHD_4th_Lhr WHD_Lhr WHD_3rd_Lhr Helicase_C ResIII Cas3-like_C_2 WHD_DprA AlkZ-like AAA_22 HTH_IclR PhoH Motif Other DBs NCBI-ProteinID:  QSL88445 LinkDB All DBs Position complement(835787..840073) Genome browser AA seq 1428 aa AA seqDB search MNLPLPATSALAGFHPAVSAWFNKTFPAVTTAQARAWPLIRQRRSTLIAAPTGSGKTLTA FLAVLDELVHRGLEQPDGLPAETLVVYVSPLKALSNDIQINLQNPLAGITAQLREMGLPE LTITTAVRTGDTPQKDRAAMRKTAPHILVTTPESLYVLLGSESGRRMLGTTRTVIIDEIH AMAAGKRGSHLSLSLERLQALCAEPLTRIGLSATQKPVEAVAQFLVGHDRPCEIVDIGHA RPRDLGIEVPPVPLSAVMANDVWELVYERLAELAREHRTTLIFVNTRRLAERLSRHLSER LGKQAVAAHHGSLAKEFRLDAEQRLKRGELQVLIATASLELGIDIGEVDLVCQISSPRSI AAFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLQIPEKPLDVLAQ QIIAEVSCQEWSEDALLAMFRRAWPYRDLDEKHYQALLSMLAEGYNGRQGIRSAYLHRDA VSRTLRGRRGAQLTAVTSGGTIPDNADYSVLLEPQGLNIGSVNEDFAVESIAGDVFQLGN TSYRILRVESGKVRVEDAQGMPPTIPFWLGEAPGRSDELSAAVARLQAQLDELLSASPGN LQPALDWLTTILGLNLASAEQLVEYLARARQTLGALPSQDTLLMERFFDESGGTQLIIHT PFGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLHSNSAE HTLIQAVLDAPLFGVRWRWNAGVALALPRFTGGRKVAPQLQRMKSEDLIASVFPDQIACL ENLAGEREVPEHPLVEQTLDDCLHEAMDSEGWLTLLRRMERGEVRLIARDLPAPSPLAAE ILSARPYTFLDDAPLEERRTQAVINRRWSDPQSTDDLGALDADAITAVREEAWPSPNSMD EMHEALMSLACISDTEARANAGWLDWLQTLMASGRACLLQIDAEHQLWLARERLSCLQAL YPHATLLTEAVALPGFDDTWAFDEALVEVIRARLGAFGPIPLPAIAEPLALPAAQVNQAL AQLEREGYVLRGQFTPNSAIEEWCERHLLARIHRYTVKRLRREIEPVALQDFMRFLFDWQ HLTPATQGQGSAVLPAIVGQFEGYPAAASAWDSDILPARLKDYSPSWLDELCRNGKLVWT RINARQKVSGSALRSTPIVLLPRSQVGLWSALAEQTPVSELSPKTQKVFEALSQHGALFF DELIHEARLLRSELEIALQELVAAGLVNADSFAGLRALITPASKRQQRSSRRGRGAFIGG MDDAGRWALLRRGSSADAAETLEHVAMTLLRRYGVVFWRLLEREADWLPSWRELLRTFHR LEARGEIRGGRFVSGLAGEQFALPEAIPLLREVRRRPQDGSLVAVCGVDPLNLAGTLLPG VKVPALVSNRLVYRDGIPVAAMVAGKPQVWVEADQVVVEQIGRKLIRN NT seq 4287 nt NT seq  +upstreamnt  +downstreamnt atgaatctgcccctccccgccaccagtgcgctggccggctttcaccccgccgtcagcgcc tggttcaacaagactttcccggcggtcaccaccgctcaggcccgtgcgtggccgttgatc cgccagcgccggtcgacgctgattgccgcgcccaccggctccggcaaaaccctgaccgcg ttcctcgccgtgcttgatgagcttgtccatcgaggtctggaacagcccgatggtctgccc gccgaaaccctggtggtctatgtctcgccgttgaaggcactgtccaacgacattcagatc aacctgcaaaatccgctcgctggcattaccgcgcaattgcgcgaaatgggcctgccggag ctgaccatcaccaccgccgtacgcactggcgacacgccgcagaaagaccgcgccgccatg cgcaagaccgcgccgcacattctcgtgaccaccccggaatcgctgtacgtgctgcttggc tcggaatccgggcgcaggatgctcggcaccacgcgcacggtgatcattgacgaaatccac gccatggccgccggcaagcgcggcagtcatctgtccttgagcctcgagcgtttgcaagca ctctgcgccgaaccgctgacccgcatcggcctgtccgccacgcagaagccggtagaagcc gtggcgcaattcctggtcggtcacgatcgcccctgcgaaatcgtcgacataggccacgcc cgccctcgggatctgggcatcgaagtgccgccggtgccgttgtcggcggtgatggccaat gatgtctgggaactggtgtatgagcgcctcgccgaactcgcccgcgagcaccgcaccaca ctgattttcgtcaacacccgacgccttgccgagcgcctcagccggcatctgagcgagcgc ctcggcaagcaggccgtagcggcgcaccacggcagcctggccaaggagtttcgtctcgac gccgaacaacggctcaagcgcggcgagttgcaggtgctgatcgccactgcatcattggag ttgggcatcgatatcggtgaagtcgacctggtctgccagatcagttcaccgcgttcgatc gccgcgtttctgcaaagggttggccgttccggacaccaggtcggcggcacgcccaagggt cgtttgttcgccactacccgcgacgatctgatcgagtgcgccgccctgctcgactgcgtg cgccggggcgagctggatacgctgcagattccggaaaagccgctggacgtgctggcgcag cagatcattgccgaggtcagttgccaggaatggtcggaggacgcgttgctggcgatgttc cgccgagcgtggccgtatcgcgatctcgacgaaaaacactatcaggccctgctgagcatg ctcgccgagggttacaacggccgtcagggcattcgcagcgcctacctgcaccgcgacgcc gtcagccgcacattacgtggccggcggggcgcgcaactgactgccgtgaccagcggcggc accattccggacaacgccgactacagcgtgctgctggaaccccagggcttgaacatcggc agcgtcaacgaagacttcgccgtggaaagtatcgccggcgacgtgttccagctcggcaat acctcgtaccgcatcctgcgggtggaaagcggcaaagtgcgggtcgaggatgcgcagggg atgccgccgaccattccgttctggctcggcgaagcgccggggcgcagtgatgaactgtcg gcggccgtcgcgcgcctgcaagcgcagttggacgaattgctcagcgccagccccgggaat ctgcaaccggcgctcgactggctgaccaccatactcggcctcaacctcgccagcgccgag caactggtcgaatatctggcgcgcgcacggcaaaccctcggcgccctgccctcgcaggac acgctgttgatggagcggtttttcgacgagtccggcggcacccaactgatcattcacacg ccgttcggcagccgcatcaaccgcgcctggggcttggccctgcgcaagcgtttctgccgc accttcaacttcgaattgcaggccgccgccagcgaagacgcgatcgtgctgtcgctgtcc accagccacagcttcgagctcgacgaagtctggcgttacctgcacagcaacagcgctgaa cacacgctcattcaagcggtgcttgatgcgccattgttcggcgtgcgctggcgctggaat gccggggtggcgctggcgttgccgcgcttcaccggcgggcgcaaagtcgctccgcagctg caacggatgaagagcgaagacctcatcgccagcgtcttccccgaccagatcgcctgcctg gaaaacctcgccggcgagcgcgaagtccccgagcatccgttggtggaacagaccctcgac gattgcctgcacgaagcgatggacagcgaaggctggctgaccctactgcggcgcatggag cgtggcgaggtgcgcttgatcgcccgtgatctgccggcaccgtcgccactggcggcagaa attctcagcgcccggccgtacacgtttctcgacgacgcaccgctggaggaacgccgcacg caagcggtgatcaatcgacgctggagcgatccgcagtcgaccgatgatctcggcgcactc gatgccgatgcgatcaccgcagtgcgcgaagaagcctggccgtcgcccaattccatggat gaaatgcacgaagcgctgatgagcctcgcctgcatcagcgacaccgaagcgcgcgccaac gcgggttggctggactggctgcaaacgctgatggccagcggccgcgcctgcctgttgcag atcgacgccgagcatcagttatggctggcccgcgaacgcctgagttgtctgcaagcactt tatccacatgcgacgttgctgactgaggcggtggcgctgcccggattcgacgacacgtgg gcattcgatgaggcgctggtcgaagtgatccgcgcccgcctcggcgcctttgggccaatc ccgttgcccgccattgccgagccgctcgcgctgccagccgcgcaagtcaatcaggccctc gcgcaactggaacgcgaaggctatgtgttgcgcggccagttcacgccgaacagcgcgatt gaagaatggtgcgaacgccatctgctggcgcgcatccatcgctacacggtcaagcgcctg cgtcgggaaatcgaaccggtggcattgcaggacttcatgcgttttctgttcgactggcag catctgacgccggccacccaaggtcagggcagtgcggtgctgccggcgattgtcggccag ttcgaaggctacccggcggcagcttcggcgtgggacagcgacatcctgccggcgcgcctc aaggactattcgccgagctggctggacgaactgtgccgcaacggcaaactggtgtggacg cgcatcaatgcgcggcagaaggtcagcggctcggcattgcgcagtacaccgattgtgctg ctgccgcgtagccaggtgggtttgtggagtgcattggcggaacagacgccagtgagcgag ttatcgccgaaaacacagaaagtctttgaggcgctgagtcagcatggcgcgctgtttttc gatgagttgattcatgaagcgcgcctgctgcgcagcgaactggaaatcgccttgcaggaa ctggtcgccgcaggtttggtgaacgccgacagcttcgccggcttgcgtgcgctaatcact cctgcaagcaagcgccagcagcgcagtagccgacgcgggcgcggcgcgtttatcggcggc atggacgatgccgggcgctgggcattgctgcgccggggttcgtcagccgatgccgccgag acactcgaacatgtcgccatgaccctgctgcgccgctacggcgtggtgttctggcgtctg ctggaacgcgaagcagactggttgccgagctggcgggaattgctgcgcacctttcatcgt ctggaagcgcggggcgagattcgtggcgggcggtttgtcagtggtctggctggcgagcaa ttcgccttgcccgaagccattcccttgctgcgcgaagtacgccgacgcccgcaggacggc agcctggtggcggtgtgtggggttgatccgctgaatctggccgggactttgctgcccggg gtgaaagtgccggcgctggtgagcaatcggctggtgtatcgcgatgggattccagtggcc gctatggttgcgggcaagccgcaggtttgggtagaggcggatcaggtagtcgttgagcag ataggcaggaaactcatccgcaattga

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