Pseudomonas atacamensis: JWU58_05360
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Entry
JWU58_05360 CDS
T07336
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pata
Pseudomonas atacamensis
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pata03400
]
JWU58_05360 (phrB)
Enzymes [BR:
pata01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
JWU58_05360 (phrB)
DNA repair and recombination proteins [BR:
pata03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
JWU58_05360 (phrB)
Prokaryotic type
JWU58_05360 (phrB)
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
QSL88719
LinkDB
All DBs
Position
complement(1148919..1150364)
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AA seq
481 aa
AA seq
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MQLIWLRSDLRQHDNTALAAAAARGPTVAVYLLSPQQWLEHDDAPCKVDFWLRNLRELSQ
SLGALNIPLLIRSAPHWDQAPAELLKLCRQLKIEAVHVNEEYGVHESRRDEAVAETLQAE
GIEFHSYLDQLLFKPGTILTKTGTYFQVFSQFRKVCYERLHRSMPALIKAPGKQAALDIE
SDAIPEAIKGFATPSESLRALWPASEQEARRRLDTFTDAQIDYYRSERDFPAKPGTSQLS
AYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWINELLWREFYKHILVGYPRVSRHRA
FRPETEALAWRDAPEELKAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLL
IDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSEKFDAEGVFIK
HWLPELAGLNKKEVHNPAAAGGLFGVADYPAPIVNLSASRERALTAFKNLPSRQPVGGSD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgatctggctgcgcagcgacttgcgccaacatgacaacaccgccctcgcggcc
gccgcagcgcgcggcccgaccgtggcggtgtatctgttgagtccgcagcaatggctggag
cacgacgatgcgccgtgcaaagtggatttctggctgcgcaatttgcgcgaattgagccag
agcctcggcgcgctgaacatcccgttgttgattcgcagcgcaccgcactgggatcaggca
ccggcagaattgctcaaactctgccggcaattgaagatcgaggcggtgcacgtcaacgag
gaatacggcgttcacgaaagccgccgcgatgaagccgtggccgaaacgttgcaggccgag
ggcatcgaattccacagttacctggatcagttgctgttcaaacccggcacgatcctgacc
aagaccggcacctatttccaggtgttcagtcagttccgcaaggtctgctacgaacgcctg
caccgctcgatgccggcattgatcaaagcaccgggcaaacaggccgcgctggatatcgaa
agtgacgcaattcccgaggcgatcaaaggcttcgccacgccgagcgaatccctgcgcgcc
ctgtggccggccagcgagcaagaggcgcggcgccgcctcgacaccttcaccgacgcgcag
atcgactactaccgcagcgaacgcgatttcccggccaaacccggcaccagccaattgtcg
gcgtacctcgccgccggagtgatctcgccacgccagtgcctgcacgctgcactgcaaagc
aatcagggcgagttcgaaagcggcaaggtcggcgcagtgacctggatcaacgagctgctg
tggcgcgagttctataaacacattctggtcggctatccacgcgtctcgcggcatcgcgcc
ttccgcccggaaaccgaggcgctggcctggcgcgatgcgccggaagaactcaaggcctgg
caagaggcacgcaccggtctgccgatcatcgacgcggcgatgcgccaactgctggaaacc
ggctggatgcacaatcgcctgcgcatggtcgtggcgatgttcctgaccaaaaacctgctg
atcgactggcgcgagggcgaacgctttttcatgcgccacctgatcgacggcgacctggcg
gccaacaacggtggctggcagtggagctcgtcgaccggcaccgactcggcgccgtacttc
cgtatcttcaacccgctgagccagtcggaaaaattcgatgccgaaggcgtgttcatcaag
cactggttgccggaactggccgggctcaacaagaaggaagtgcacaatccggcggcagca
ggaggactgttcggcgtggccgattatccggccccgatcgtcaacctcagcgcctcacgc
gagcgtgcgctgacggcgttcaagaacctgccgtcgcgccagccagtgggcggcagcgat
gagtga
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