Pseudomonas atacamensis: JWU58_08920
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Entry
JWU58_08920 CDS
T07336
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWU58_08920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pata03019
]
JWU58_08920
03009 Ribosome biogenesis [BR:
pata03009
]
JWU58_08920
Enzymes [BR:
pata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWU58_08920
Messenger RNA biogenesis [BR:
pata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWU58_08920
Ribosome biogenesis [BR:
pata03009
]
Prokaryotic type
rRNA helicases
JWU58_08920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QSL89394
LinkDB
All DBs
Position
1941620..1943293
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPST
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgcttttaatctcaacccgaatattcttgcagcc
gtcgcagcgactggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gcactgcctatcctgcaccgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgagagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgttaccgtcgtggctgtctacggcggcgcaccgatgggcccgcaactcaag
gcaatccgtaatggcgcacagattgttgtcgctactccgggtcgtctttgcgaccacctg
cgtcgcgacgagaaagtcctgtcgaccgtgaaccatctggttctcgacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggctctgccatcgacc
cgccagaccgtgctgttctcggcgaccctgccgcagtcgatccgcgccattgccgaacgc
cacctgcgcgatccgcaacacgtcaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaaaacctcggccgtactcagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctcgacgccaaaggctacaaagccgccgcgttgaacggtgatattgcc
cagaatcagcgtgagcgcgtgatcgactcgctcaaggatggtcgcctggacatcgttgtc
gcgaccgacgttgctgcccgtggtctggacgttccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgacccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgcgtaaccggtcagaaagttgccgaagtacgcctgccagacgctcaagccgttctc
gatgcacgcatcaagaaactgaccaacagcctgtcgccgctggttgctgatgccgaatcg
actcacggtgagctgcttgatcgcctgactgccgacatcggttgcaccccgcgtgcactg
gccgctgcgctgctgcgcaaggctaccaacggtcaagcgctgaacctggcagcgatcgag
aaggaacgtccactggtgccgaacaacgcaccgcgtggcgaccgtcctgagcgttccggt
gatcgtcctgatcgtggtgaccgcgagcgtcgcgcgccaatgcctttgggcgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgcgaaaaacctgctgggc
gccatcctcaacgaaggcggtctggcccgtgaagcgatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgaactgccggaagaaggtctggaaaagctcctgaccaagctgaag
gacactcgcgtggctggtaagcagctcaagctgcgtcgctaccgcgaagattga
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