Pseudomonas atacamensis: JWU58_13045
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Entry
JWU58_13045 CDS
T07336
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JWU58_13045
09124 Replication and repair
03420 Nucleotide excision repair
JWU58_13045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pata03021
]
JWU58_13045
03036 Chromosome and associated proteins [BR:
pata03036
]
JWU58_13045
03400 DNA repair and recombination proteins [BR:
pata03400
]
JWU58_13045
Enzymes [BR:
pata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
JWU58_13045
Transcription machinery [BR:
pata03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JWU58_13045
Chromosome and associated proteins [BR:
pata03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
JWU58_13045
DNA repair and recombination proteins [BR:
pata03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JWU58_13045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
QSL90173
LinkDB
All DBs
Position
2859304..2861634
Genome browser
AA seq
776 aa
AA seq
DB search
MSYSVAVRALCEFTAKTGDLDLRFTPSPTALEGIVGHRTVASRRSEQYQSEVALQGEFGE
LKVKGRADGYDPAQNCLEEVKTYRGDLSKQPANHRQLHWAQAKIYGWLMCQKLQLQQINL
ALVYFDVVSEKETCLVESHSAESLQGFFAQQCALFLQWAEQEMAHREARNLAAQQLPFPH
ADFRPGQRHLAESVFKAVSTGRCLMAQAPTGIGKTLGTLFPMLKALAPQQLDKVFFLTAK
TPGRKLALDASQVLFRQTPDLPLRVMEMVARDKACEHPDKACHGESCPLAQGFYDRLPAA
REAASRINLLDQAAMREVAAQHSVCPYYLSQEMARWADVVVADYNYYFDFSALLFGLAQL
NQWKVAVLADEAHNLVERGRQMYSASLDQFTLASVRKTAPAALKNSLQRVNREWNALHAP
QLAAYQAYDKAPDKFLHAISLCCAAIGDYLNEHPQGLDSGLQNFYFDLLQFARVAELYDE
HYLFDISKRDLDRKRPLSQLCLRNVVPAAFIGPRLTAARSSVLFSATLSPRNYYADLLGT
PADTVCIDVESPFSAEQLQVHIVSQISTRFNHRQASLEPIVELIARQFSERPGNYLAFFS
SFDYLQQVATLLAERHPRITQWLQSRGMAEGARQAFLDQFSADSQGVGFAVLGGAFGEGI
DLPGARLIGAFIATLGLAQLNPVNEQMKRRMAAIFGAGYDYTYLYPGMQKVVQAAGRVIR
TREDRGTVMLIDDRFAESRIQQLLPRWWAIKSEPALFKSTDSRILQPMTVAGECDE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
ttgagctacagcgttgccgtgcgtgcactgtgcgagttcaccgccaagaccggcgacctc
gacctgcgcttcaccccgtcaccgaccgcgctggaaggcatcgtcggccatcgcaccgtg
gcctcgcgacgcagcgaacagtaccagagcgaagtggcgctgcaaggcgaattcggcgag
ctgaaggtcaagggcagggcggacggttacgacccggcgcaaaactgcctggaagaagtc
aaaacctatcgcggcgacttgagcaagcaaccggccaatcaccgccagttgcactgggcg
caggcgaaaatctacggctggttgatgtgccagaaactgcaattgcagcagatcaatctg
gcgctggtgtatttcgacgtcgtcagcgaaaaggaaacctgcctggttgaatcccacagc
gccgagtcgcttcaggggtttttcgcgcagcagtgcgctttgttcctgcaatgggccgag
caggaaatggcccatcgcgaagcgcgcaatctggccgcgcaacaactgccgttcccgcac
gcggattttcgtcccggccaacggcatctggccgaatcagtgttcaaagccgtcagcacc
ggccgctgcctcatggcccaggcgccgaccggcatcggcaaaacccttggcacgctgttc
ccgatgctcaaggccctggcgccgcagcagttggacaaggtgttctttctcaccgccaag
acacccggacgcaaactggcgctcgatgccagccaggtgttgttcaggcaaacgccggac
ttgccgctgcgggtgatggaaatggttgctcgcgacaaggcctgcgaacacccggacaaa
gcctgtcatggcgaatcctgcccgttggcccaaggtttttatgatcgcttgccggccgcc
cgcgaagcggccagccgcatcaacctgctcgatcaggcggcgatgcgcgaagtcgccgcg
cagcacagcgtgtgcccgtactacctgagtcaggaaatggcccgttgggcggatgtagtg
gttgccgactacaactattacttcgacttcagcgcgctgctgttcggtctggcccagctc
aatcagtggaaagtcgcggtgctcgccgacgaggcgcacaacctggtcgagcgcggccgg
cagatgtacagcgccagcctcgaccagttcaccctcgccagcgtgcgcaaaaccgcgccc
gcagcgttgaagaattccctgcaacgggtcaaccgcgaatggaacgcgctgcatgcgccg
caactggcggcctatcaggcctacgacaaggcgccggacaagttcctgcacgccatctcg
ctgtgttgcgcggccattggcgattacctcaacgaacatccgcaaggcctcgacagcggt
ctgcagaacttctatttcgacttgctgcaatttgcccgggtcgccgagctgtacgacgag
cattacctgttcgatatcagcaaacgcgacctcgaccgcaagcgtccactctcgcaactg
tgcctgcgcaatgtggtgccggcggcgttcatcggcccgcgcctgacagcggcgcgcagc
agtgtgctgttctcggccacgctgagcccgcgcaactactacgccgacctgctcggcacg
cccgccgacacggtgtgcatcgacgtcgaatcgccgttcagcgccgagcagttgcaggtg
cacatcgtcagccagatctccacgcgttttaaccatcgccaggcctcgctggagccgatc
gtcgaactgatcgcccgccagttcagcgagcgcccgggcaactatctggcgttcttcagc
agtttcgattacctgcaacaggtcgcgaccttattggccgagcgccatccgcgcatcact
cagtggctgcaatcgcggggcatggccgagggcgcgcggcaggcgtttctggaccagttc
agcgccgacagccagggcgtcgggtttgcggtgttgggcggcgcgtttggcgagggcatc
gatttgcccggtgcgcggttgatcggtgcgttcatcgccacgctggggctggcgcagctc
aacccggtcaacgagcagatgaaacggcgcatggccgccatttttggcgccggctacgac
tacacctatctgtacccgggcatgcaaaaagtcgtacaagccgccgggcgggtgattcgc
acccgcgaggatcgcggcacggtcatgctcatcgacgaccgctttgccgaaagccgcatc
cagcaactgctgccacgctggtgggcgatcaaaagcgaaccggcgcttttcaaatcgacg
gattcacgcatacttcagcccatgacagtggctggtgagtgtgatgagtga
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integrated database retrieval system
