Pseudomonas atacamensis: JWU58_17180
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Entry
JWU58_17180 CDS
T07336
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pata
Pseudomonas atacamensis
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pata03016
]
JWU58_17180
Enzymes [BR:
pata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JWU58_17180
Transfer RNA biogenesis [BR:
pata03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JWU58_17180
Prokaryotic type
tRNA splicing ligases
JWU58_17180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TFX_C
DUF1414
Motif
Other DBs
NCBI-ProteinID:
QSL85910
LinkDB
All DBs
Position
complement(3798618..3799844)
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AA seq
408 aa
AA seq
DB search
MKDRTYQLLEVANGKPIKLWTEGVPVENEARAQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTAADLPDNLHGLRTAIEKAVPHGRSSNRS
RRDKGAWDEVPQQADQAWAGLQPRFKLITDKYPKLANTNNRAHLGTLGSGNHFVEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIQMAQADMRQHIANLPDRDLAYFEEGSQHFDDYVEAV
GWAQDFARQNRELMMRAVIQATRQIIHKPFEVALEAVNCHHNYVQKERHYGEDVLITRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEESFSSCSHGAGRTMSRTKAKNTFTVADQIRA
TAHVECRKDEAVIDEIPMAYKDIDKVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaccgaacctaccagcttctcgaagtcgccaacggcaagcccatcaaactctgg
accgaaggtgtcccggttgaaaacgaagcccgcgcacagttgatgaatacggcaaaaatg
ccgttcatcttcaagcatctggcggtgatgcccgatgtgcacttgggcaagggctcgaca
attggcagcgtgattccaacggtcggcgcgatcattcccgcagcggtgggcgtcgacatc
ggttgcggcatgatcgctgcgcgtacgtcgctgacggccgcagatctgccagacaacctg
catggattgcgtactgcaatcgaaaaagcggtgccgcacggccgcagttcgaatcgttcg
cggcgagacaaaggcgcctgggacgaggttccgcagcaagccgatcaggcctgggcgggg
ttgcagccgcgcttcaaattgatcaccgacaagtatccgaaactggccaataccaacaac
cgggcgcacttggggacgctcggcagtggcaatcacttcgtcgaagtgtgcctggatgaa
gccaaccgggtgtggttcatgttgcacagtggttcgcgtggcgtcggcaacgctatcggc
aacctgttcatccagatggcccaagccgatatgcgccagcacattgccaacctgccggac
cgtgacctggcctatttcgaagagggcagtcagcattttgatgattacgtggaggcggtt
ggctgggcgcaggacttcgccagacagaaccgtgaactgatgatgcgcgcagtgattcag
gccacgcggcagatcatccacaagcctttcgaggtcgcgctcgaagcggtcaattgccat
cacaactacgtgcagaaggaacggcattacggtgaagacgtgctgattacccgcaaaggc
gccgtgtcagcgaagaagggcgagctggggattattccaggctcgatgggcgccaagagc
ttcatcgttcgcggtctgggcaatgaagagtcattcagttcctgcagccatggcgctggg
cgcaccatgagccgcacgaaggccaagaataccttcaccgtcgccgatcagattcgcgcc
acggcccacgtggaatgccgcaaggacgaagcggtgattgacgaaattccgatggcctac
aaggacatcgacaaagtcatgcacgcccagcgtgagctggtggaagtgctgcacaccctg
cgtcaggtggtgtgcgtcaaaggataa
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