Pseudomonas atacamensis: JWU58_20310
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Entry
JWU58_20310 CDS
T07336
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWU58_20310 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pata03019
]
JWU58_20310 (recQ)
03400 DNA repair and recombination proteins [BR:
pata03400
]
JWU58_20310 (recQ)
Enzymes [BR:
pata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWU58_20310 (recQ)
Messenger RNA biogenesis [BR:
pata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWU58_20310 (recQ)
DNA repair and recombination proteins [BR:
pata03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JWU58_20310 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HTH_40
HTH_23
Sigma70_r4_2
GerE
Motif
Other DBs
NCBI-ProteinID:
QSL86497
LinkDB
All DBs
Position
complement(4449850..4451979)
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLALRIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPNVPRIALTATADKRT
REEIVDRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK
VEEVAAFLSEQGFPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQALLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQALSAIFRTG
QRYGVGHLVDVLLGKDNEKVRSFGHQHLSVFGVGKALSESEWRSLFRQLVARGLADVDHE
GYGGLRLNDSCRPLLKGKVKLELRRDLKPQVTAKTGSKSQASQLVRGEEREQWEALRALR
RKLAEEHGVPPYVIFPDSTLLEMLRSQPTSLAEMARVSGVGARKLERYGEAFLEVLGGEA
EAPKVVADVRHELITLARAGMTPLQIAGQLQCSEKNVYAMLAEAIGKQQLSLEQALDLPE
ELMGEVQDAFLDGEGELPSVAEVAELFAGRVPEGVLYCVRAALQSEFEM
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggc
cgtcagggtgcgatcattgagcgcgtggccagcggcggtgatgcgctggtgctgatgcct
accggtggcggcaagtcgttgtgcttccaggtgccggcgctgttgcgtgaaggtctggcg
gtggtcgtgtcgccgttgatcgcgctgatggacgatcaggtcgccaccctcgaagaactg
ggcgtggccgccgctgcgctgaactccacactgagtgccgagcagcagcgcgatctcgct
ctgcgaatcaaacgcggcgaagtgaaaatgctctatctggcgcccgagcgcttggtgcag
ccgcgcatgctggcattcctgcaaagcctggaaatcgccttgttcgccatcgacgaagcg
cattgcgtatcgcaatggggccacgactttcgccgcgaatacctgcaactgggtcaattg
gccgagctgttccccaacgttccgcgcattgccctcaccgcgaccgccgacaagcgcacc
cgcgaagaaattgtcgatcgcctgcacctgcagaacgccgagcgctttctgtcgagcttc
gaccgcccgaatattttttaccgcatcgtcccgaaggagcagccgcgcaagcagttgctg
gcgttcctcgccgaacggcgcagcgatgccggcatcgtttattgcctgtcgcgcaagaag
gtcgaagaagttgcggcgttcctcagcgagcagggcttcccggcgctgccgtatcacgcc
ggtctgcccaatgatctgcgcgcctatcaccagaagcgcttcctcaatgaggaaggcctg
atcatggtcgccaccgtggcgttcggcatgggcatcgacaagcccaacgtacgcttcgtc
gcgcaccttgatctgccgaaatctctcgaggcgtattaccaggaaaccgggcgcggcggc
cgtgacgggctgccggcggatgcgtggatggcttacggtctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgaaggcgacgagcggcacaagcgtctggagcagcacaag
ctcgacgccatgctctcgctgtgcgaagagacccgctgccgccggcaggcgttactggcc
tatttcgacgaagacatgcccgaaccgtgcgggcattgcgacaactgtgtcgacggcgtg
cagacctgggacgccaccgagcctgcacgtcaggcattgtcggcgattttccgcaccggc
cagcgctatggcgtcggtcatctggtcgacgtgttgctgggcaaggacaacgaaaaggtg
cgcagcttcggccatcagcatttgtcggtgtttggcgttggcaaggcgttgagcgagagc
gagtggcgctcgctgttccgccaactggtggcgcgtgggttggccgatgtcgaccacgag
ggttatggcggtctgcgcttgaatgacagttgccggcctttgctcaaaggcaaagtgaaa
ctggaactgcgccgcgacctgaaaccgcaagtcaccgccaaaaccggcagcaagagccag
gccagccagctggtgcgcggcgaggaacgcgaacagtgggaagccttgcgcgcactgcgg
cgcaaactcgccgaagaacacggcgtgccgccatatgtcatcttccctgactcgacgcta
ttggaaatgctccgcagccaacccacctcgctggcggaaatggcccgagtcagcggcgtt
ggcgcacgcaagctggaacgttacggcgaagccttcctcgaagtactcggcggcgaggcg
gaggcgccgaaggtggtcgccgatgtccgtcacgagctgatcaccctggcccgcgccggc
atgaccccgctgcagatcgccgggcagttgcagtgctcggagaagaacgtctacgccatg
ctcgccgaagccatcggcaagcagcaattgtcgctggagcaggcgctggacttgcctgag
gaattgatgggcgaagtgcaggacgcgttcctcgatggtgagggcgagttgccgtcggtc
gctgaagtggctgagctgtttgccgggcgtgtgccggaaggcgtgctgtattgcgtgcgg
gcggcgttgcagtctgaattcgagatgtga
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integrated database retrieval system
