Pseudomonas atacamensis: JWU58_20505
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Entry
JWU58_20505 CDS
T07336
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pata
Pseudomonas atacamensis
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pata03019
]
JWU58_20505 (hrpA)
Enzymes [BR:
pata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JWU58_20505 (hrpA)
Messenger RNA biogenesis [BR:
pata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JWU58_20505 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
T2SSE
NACHT
ABC_tran
ResIII
AAA_30
SLFN-g3_helicase
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QSL86536
LinkDB
All DBs
Position
complement(4501008..4504919)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVARMQASCDQVLARR
ASLPVIRYDDSLPIAAKRDEIKKALEQHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELGTPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLSLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPKLHKAVLVGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREGLVRGEIQSRAKCLSANQKLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLARE
ASEVTARDYPDTLHIGDLELALTYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGLI
EAKCIALVRNLPKALRKNFVPVPDFIKAALQRMTFAEGSLPQALGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQSAKSQQPVE
AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGQTELGLLYRELGRVDALVEDILLASLDSCILEGEDPLPRDGAGLAAL
AERKRGNWTEHAERVARLTLEILKIWHGLQKRFKGKIDLAQAVALNDIKQQIGNLVYPGF
VRETPMQWLKELPRYLKAVEQRFEKLGAQVQKDRVWSGELAGLWAQYQTRAAKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccctccatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccgtcaccggctgcggcggcagttgcttgagctgcgcaagaaacccgacgaggcc
aaactggcccagtgggtggcgcggatgcaggcgtcctgtgatcaggtactggcgcgtcgc
gcgagcctgccggtgattcgttacgacgacagtttgccgatcgcggccaagcgcgacgag
atcaaaaaggccctggagcaacatcaggtgctgatcatcgccggcgaaaccggttcgggc
aaaaccacccagttgccgaagatctgcctggaaatcggtcgcggccagcacggtctgatc
ggccatacccagccgcgtcggatcgccgcgcgcagtgtcgccagccgtgtcgccgaagag
ctcggcacgccgctcggtgcgctggtcggctatcaggtgcgcttcgaggatcagagcgat
gccaacaccctgatcaagctgatgaccgacggcattctgctggcggaaacccagaacgat
cgttatctggaacgctatgacacgatcatcgtcgacgaagcccacgaacgcagcctcaac
atcgatttcctcctcggctacctgaaaaccctgctgccacgccgtccggacctcaaggtc
atcattacttcggcgaccatcgatctggagcgcttctccaagcacttcgatgacgcgccg
atcgtcgaagtgtcgggccgtacttttcctgtggaaacctggtaccggccgctgagcctg
gagcaggacgaagagggcaaccgggtcgaggacgacctgaccgtcgatcaggcgattctc
gccaccctcgacgaaatcgccgcctacgagcgcagcgaacggcgcagccccggcgatgta
ctggtgttcctgcctggcgagcgcgagattcgcgacgccgccgacatgttgcgcaaggcc
cagctcaaacacaccgagatcctgccgctgtacgcgcgcctgtcgccggctgaacagcag
cggattttccagtcgcatccgggccgccgcgtggtgctggcgaccaacgtcgctgagact
tcgctgaccgtcccgggcattcgctatgtgatcgacagcggcaccgcgcgcatcagtcgt
tacagctatcgggccaaggttcagcgcttgccgatcgaagcgatttcccaggccagcgcc
aatcagcgtaaaggtcgttgcgggcgggtcgagccgggtatctgcgtgcgtttgtacagc
gaagaggacttccttgggcgcccggaatttaccgatccggaaattctgcgcaccaacctc
gccgccgtgatcctgcagatgctccatctgcgcctcggcgaaatcaccgcgttcccgttt
atcgaaccgccggacggcaaggcaatcagcgacggtttcaacctgctgcaagagctttcg
gcggtagatcgcaacagtcagctgacgccgctcggtcgccagttggcgcgcttgccggtc
gacccgcgcatgggccgcatgctcctcgaagcggccaagctcggcagcttgcaggaagtg
ctgatcgtcgccagcgccatgtcgattcaggacccgcgcgagcgtccgccggagcgtcag
caagcggcggatcaggcccatgcgcaatggaaggatccggattccgacttcgccgggctg
gtcaatttgtggcgtggttttgaagaacaacgccaagcgctgaccgccaacccgctgcgt
aactggtgccggaagaacttcctcaattacctgcgcctgcgcgaatggcgtgattctcat
cgccagttgagcctgatctgccgcgacatgcagctgagcctgaacaaagagccggcggat
tacccgaagctgcacaaagcggtgctggtcggtttgctcagccagatcggccagaaaacc
gaagacggcgattacctcggcgcgcggcaacggcgcttctggattcatccgtcgtcgggc
atcggcaagaagcgcccgcagtggctgatgactgctgagctggtggaaaccaccaaactc
tacgcgcggatggttgccaagatcgatgccgactggatcgagccgctggccgggcacctg
atcaagaagaatcacttcgagccgcattgggagaagaagcggggccaggtcgtcgcctac
gagcagatcaccctgttcggcctgatcgtggtcggtcgccgcccggtgcattacggcccg
gtcgatccggtggtatcccgtgagctgtttatccgcgaaggcctggtgcgcggcgagatt
cagtcgcgggccaaatgcctgagcgccaatcagaaactgctcgagcagctcgacgaactg
gaggccaaggctcgccgtcgcgacattctcgccgacgaagaaaccctctacgccttctac
gatgcacgtctgccggccgagatccaccagaccgcgaccttcgacagttggtacaaggtc
aacagccagaaagatccgcaactgctgatcatgcgcgaagaagacgtgttggcccgcgag
gccagcgaagtcaccgcccgtgattacccggatacgttgcacattggcgatctggaactg
gcgctgacttatcatttcgagcccaatcacccgcgcgacggcgtgaccttgcgcgtgccg
gctccgctgctgccgatgctgccgccggagcgtctggaatggctggtgccggggctgatc
gaggccaagtgcattgctctggtgcgcaacctgccgaaagccctgcgcaagaacttcgtg
ccagtgccggacttcatcaaggccgcgttgcagcgcatgactttcgccgaaggttcgctg
ccgcaagcgctcggtcgcgagctgctgcgcatgaccggcgcgcgggtcagcgatgaagcg
tgggcggaagcggcgcagcaggttgagagccatctgcgcatgaacctggaaatcgtcgat
ggccagggcaagttccttggcgagggccgcgatctggctgagctgaccgcacgcttcgcc
gaagccagccaggccgcgctggcggtgccgcagagtgcgaaaagtcagcaaccggtcgag
gcaaaagtctttgccccagtggcggaaaagacccagcagaagatcgccgggctgtcgatg
acggtgtacccggcgctggtggaagagggcggcacggtcaaggagggacgcttctctacc
ccggccgaagccgagttccagcaccgtcgcgccttgcagcgcttgctgatgcagcaactg
gccgagccggcgaaattcctgcgcggcaagttgcccgggcagactgaattgggcttgctg
tatcgcgaactgggccgggtcgatgcgctggtcgaagacattctgctggccagtctcgac
agttgcattctcgaaggtgaagacccgttgccccgcgatggcgccgggttggcggcattg
gccgaacgcaaacgcggcaactggaccgagcacgccgagcgggttgcgcggctgactctg
gaaattctcaagatctggcacggtctgcaaaaacgcttcaagggcaagatcgatctggcg
caagcggtggcactcaacgacatcaagcaacagatcggcaatctggtctatccgggtttc
gttcgcgaaacgccgatgcagtggctcaaagagttgccgcgttacctgaaagcggtcgag
cagcgtttcgagaaactcggtgcgcaggtgcagaaagatcgggtctggagcggggaactc
gctggcctgtgggcgcaataccagacccgcgcggccaagcatgcgcaggaaggcaagcgt
gatccgcagctggagttgtaccgctggtggctggaggaataccgcgtgtcgctgttcgcc
caacagttgggcaccaaagtgccgatctcggacaagcgcctgagcaaacagtggagccag
gtcgagccctga
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