Pseudomonas atacamensis: JWU58_20655
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Entry
JWU58_20655 CDS
T07336
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pata
Pseudomonas atacamensis
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pata03016
]
JWU58_20655 (rnd)
Enzymes [BR:
pata01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JWU58_20655 (rnd)
Transfer RNA biogenesis [BR:
pata03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JWU58_20655 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QSL86566
LinkDB
All DBs
Position
complement(4530786..4531919)
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AA seq
377 aa
AA seq
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MAIDIHWIRDNESLAQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGKRAYLIDPL
TINAWQPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVELRPKLSDDKFAWV
LEDGAELVANLRRETDPYEVYREAKLAWKLSRAQLAVLRELCAWREKEARARDLPRNRIV
REHSLWPLARTQPDNLAALGKIEDMHPRTVRQDGQFLLDLIKRSGSVGPDQWPPAVPEPL
PIEAAALIKQLRALGQAEAERLGIAPELMLRKKTLEALVKSGFPEGPYQLPDSLRGWRRE
LLGQKLLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggctatcgatattcactggattcgcgacaacgaaagcctcgcgcagttttgcgccgag
tggcagcagctgccgttcgttgccctcgacaccgaattcatgcgggtcgacaccttctac
ccgattgccggcctgttgcagatcggcgacggcaaacgcgcctacctgatcgatccgctg
accatcaacgcctggcaaccgctggccgcgttgctggaaaacccggcggtgctcaaagtc
ctgcacgcctgcagcgaagacctcgaagtgctgttgcgcctgaccggcagcctgccggcg
ccgctgttcgacacgcaactggccgccgcttacctgaacctcggtttttcgatgggctat
tcgcgactggtgcaggaagtgctcggcatcgacctgcccaagggcgagacccgctccgac
tggttgcagcgtccgctgtccgaaacccagatcagctatgccgccgaagatgccgtgcat
ctggccgaggtgttcgtcgagttgcggcccaagctgtccgacgacaagttcgcctgggtg
ctggaggatggcgccgaactggttgccaacctgcgccgcgagaccgatccgtacgaggtc
tatcgcgaggcgaaactggcgtggaagctgtcccgtgcgcaactggccgtgctgcgtgaa
ctgtgcgcctggcgcgaaaaagaagcccgcgcccgcgacctgccgcgcaaccgcatcgtc
cgggaacactcgctgtggcccctggcccgcacgcagccggataacctcgcggcgctgggc
aagatcgaagacatgcacccgcgtaccgtacgtcaggacggtcagtttctgcttgatctg
atcaagcgctctggcagtgtggggccggatcaatggccgccggcagtgcccgagccgttg
ccgatcgaagccgctgcgttgatcaaacaactgcgcgcgctgggtcaggccgaggccgaa
cgcctgggtattgccccggaactgatgctgcgcaagaaaaccctcgaagcgctggtcaaa
agcggcttccccgagggtccttaccaattgcccgattcgctgcgtggctggcgccgcgaa
ttgctcggccagaagctgctcgacagcctggccaccgccggagaacagccttga
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