Pseudomonas atacamensis: JWU58_21605
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Entry
JWU58_21605 CDS
T07336
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pata
Pseudomonas atacamensis
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pata03009
]
JWU58_21605 (rimO)
Enzymes [BR:
pata01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
JWU58_21605 (rimO)
Ribosome biogenesis [BR:
pata03009
]
Prokaryotic type
ribosomal protein modification factors
JWU58_21605 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Matrix_Paramyxo_N
Motif
Other DBs
NCBI-ProteinID:
QSL86745
LinkDB
All DBs
Position
4732866..4734203
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AA seq
445 aa
AA seq
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MSTTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRDVHPSVLAVTGPQQYEQVVNAVHEVVP
PRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKNWREICPD
LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVDGAPANDLDLEVVPDDVK
QDRWERFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAVGRCFFDAPEIDGNVFIDNGS
NLKPGDKVWCKVTDADEYDLWAEQI
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccactcctgcgccggccaatccaaaggttggctttgtatctctgggttgcccg
aaagcactggtcgactccgagcgcatcctgacccagctgcgcatggaaggctatgacgtg
gtgtccacctatcaggacgccgacgtcgtggtggtcaacacctgcggcttcatcgattcg
gccaaggccgagtcgctggaagtgatcggcgaagcgatcaaggaaaacggcaaggtcatc
gtcaccggttgcatgggcgtggaagaaggcaacatccgcgacgtacacccgagcgtgctg
gccgtgaccggtccgcagcagtacgagcaagtggtcaacgccgtgcacgaagtggtgccg
ccgcgtcaggatcacaacccgctgatcgacctggtgccaccgcaaggcatcaagctgacc
ccgcgccactacgcgtacctgaagatttccgaaggctgcaaccacagctgctcgttctgc
atcatcccgtcgatgcgcggcaaactggtcagccgtccggttggcgatgtgctcgacgag
gcgcagcgcctggtcaaatccggcgttaaagagttgttggtgatctcgcaagacaccagc
gcttacggcgttgatgtgaaatatcgcaccggtttctggaacggcgcgccagtgaaaacc
cgcatgaccgagctgtgcgaagcgctgagcacgctgggcgtctgggtccgcctgcattac
gtttatccgtacccacacgtcgacgagctgattccactgatggccgccggcaagatcctg
ccgtacctggatatcccgttccagcacgccagcccgaaagtcctgaagtcgatgaaacgc
ccggcgttcgaagacaagaccctggcgcgcatcaagaactggcgcgaaatctgcccggac
ctgatcatccgttcgaccttcatcgtcggcttcccgggcgaaaccgaagaagacttccag
tacctgctcaactggttgaccgaagcccagctcgaccgcgtcggctgcttccagtactcg
ccggtggacggcgcaccagcgaatgatctggatctggaagtggtaccggacgacgtcaag
caggatcgttgggagcgcttcatggcgcaccagcaggcgatcagctcggcacgcctgcaa
atgcgcatcggtcgtgagattgaagtgctggtggatgaagttgacgagcaaggtgcggtc
ggccgttgcttcttcgacgccccggaaatcgatggcaacgtgtttatcgacaatggcagc
aacctgaagccgggcgacaaggtctggtgcaaggtgactgacgcagacgaatatgatttg
tgggctgagcagatctaa
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