Pseudomonas atacamensis: JWU58_22695
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Entry
JWU58_22695 CDS
T07336
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWU58_22695 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pata03019
]
JWU58_22695 (rhlB)
Enzymes [BR:
pata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWU58_22695 (rhlB)
Messenger RNA biogenesis [BR:
pata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWU58_22695 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QSL86955
LinkDB
All DBs
Position
4967742..4969220
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AA seq
492 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPVPSAPSHAPGHRTDAPQADRPAPAAAPKPEEIPAAPAPI
AVEPAPSEAPKPARPRREPKPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDL
GFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRA
LIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLL
DFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVM
NLAKQWTTDPAIVEIEITNVANENVEQHIYAVAAADKYKLLYNLVNDNGWERVIVFANRK
DEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS
HVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPT
HLLRAVERKRPQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggtaaaagcgaggctgagcagctcgcg
ccagttcccagtgcgccgtcgcacgcccccggtcatcgcaccgatgccccgcaggccgac
cgccccgctcccgcagccgcaccgaagccagaagaaatacccgctgcgccagcgccaatt
gccgtagagcctgcacccagcgaagcgccgaaaccggccaggccacgtcgcgaaccgaag
cccaaggcaccggtcattccatggaaactcgaagacttcgtcgtcgagccgcaggaaggc
aaaacccgctttcacgatttcaagcttgctccggaactgatgcacgccatccaggatctg
ggctttccgtactgcacgccgatccaggcgcaggtgctgggtttcaccctcgccggcaaa
gacgccattggccgcgcgcagaccggcaccggcaagaccgccgcattcctgatctcgatc
atcactcagttgctgcagacgccgccgccgaaagagcgctacatgggcgaaccgcgcgcg
ctgatcatcgcgccgacccgtgagctggtggtgcagatcgccaaggacgccgctgacctg
accaagtacaccggcctcaacgtcatgaccttcgtcggcggcatggacttcgacaaacag
ctcaagcacctcgaagcacgtcattgcgacatcctcgtcgccacgccgggccgcttgctc
gacttcaaccagcgcggcgacgtgcatctggacatggttgaagtgatggtgctggacgaa
gccgaccgcatgctcgacatgggtttcatcccacaggtacggcagatcattcgccagacc
ccgccgaaatccgagcgccagaccctgctgttctccgcgaccttcaccgaagacgtgatg
aatctggccaagcaatggaccaccgacccggccatcgtcgaaatcgaaatcaccaacgtc
gccaacgagaacgtcgagcagcacatctacgccgtggccgctgccgacaaatacaagctg
ctctacaacctggtcaacgacaacggttgggagcgggtcatcgtgtttgccaaccgcaag
gacgaagtacgccgcatcgaagagcgtctggtgcgtgacggcatcaacgccgcgcaactc
tccggtgatgtgccgcagcacaagcgcatcaaaaccctggaaggtttccgtgaaggcaag
attcgcgtgctggtcgccaccgatgtcgccggtcgcggcatccacatcgacggtatcagc
cacgtgatcaacttcactttgccggaagtgccggacgactacgtgcaccgcattggccgt
accggtcgcgcaggcgctgacggtgtgtcgatcagctttgccggcgaggacgactcctac
cagttgccgtcgatcgaagaaaaacttggtcgcaagatcagctgcgaaaccccgccgacg
catctgctgcgtgcggttgagcgcaagcgtccgcagtaa
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