Pseudomonas atacamensis: JWU58_23930
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Entry
JWU58_23930 CDS
T07336
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JWU58_23930 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pata03400
]
JWU58_23930 (recD)
Enzymes [BR:
pata01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JWU58_23930 (recD)
DNA repair and recombination proteins [BR:
pata03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JWU58_23930 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
AAA_11
UvrD_C_2
Helicase_RecD
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
AAA_16
AAA_17
AAA_28
TraI_hel_assoc_N
nSTAND3
PhoH
T2SSE
NTPase_1
AAA_5
NACHT
SAS4
AAA
Motif
Other DBs
NCBI-ProteinID:
QSL87189
LinkDB
All DBs
Position
complement(5238175..5240283)
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AA seq
702 aa
AA seq
DB search
MSRTFADLLPTPLEADSLSKLSPLTRADDLLLLLSRWVERGWLRALDRAFVAFLHELEPE
TDPLVLLAAALTSHQLGHGHVCLDLFETLNAPDFALSLPPEGDVQGGVLLLPSQLLETLD
GAHWCKVLASSSLVALAADASEPAQTRPLVLSSKRLYLRRYWTYERRIDAALRQRLMQSE
PTPDDLPQRLNELFGGAKSAAVIDWQKLACAIATRSAFSIITGGPGTGKTTTVVRLLALL
QAPAVEAGHPLRIRLAAPTGKAAARLTESISQQVQSLQVAEAVRTAIPSDVTTVHRLLGS
RPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDAMPAHARLVLLGDKDQLASVEA
GAVLGDLCRDAEGGWYSPQTRQWLESVSGESLQGSGLHEDRDGTHPLAQQVVMLRHSRRF
GEGSGIGQLARRVNQQLADEARQLLAAGSYDDVYSLPLKGEHDHKLERLLLEGHRNGPQG
YRHYLSVLRDQRPSSTRPLEHADWTDWAREVLQAFDTFQLLCAVRKGPWGVEGLNQRITA
ALLKARLIESDQQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPEREGAEIGKTVLRVAFP
RNDGQGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPDALNPVLTKELIYTGIT
RARYWFTLIEPRAGVFEEAVQRKVKRLSGLMLELEESNESQG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcacattcgccgatctgctgccgacaccactggaagcggacagcctgtcgaaa
ctctcgccgctgacccgcgccgatgatttgctgttgttgctgagccgttgggttgagcgc
ggctggctgcgcgcgttggaccgcgcctttgtcgctttcctgcatgaactcgagcccgag
accgacccgttggtgctgctggctgcggcgttgaccagtcaccagctcggccatggtcat
gtgtgtctggacctgtttgaaacactcaatgcaccggattttgccctgtcattgccgccc
gaaggcgatgtgcagggcggtgtgttgttgctgccttcgcaattgctcgaaacgctcgat
ggagcccattggtgcaaagtgctggcgagcagctcgctggtcgcgctggccgccgatgcc
agtgaaccagcgcagacacgtccgttggtgctgtcctcgaaacgcctgtacttgcgccgc
tactggacctacgaacgccgcatcgatgcagcgttgcgccaacgcttgatgcaatcggag
ccgacgccagatgatctgccgcagcgcctcaatgaattgttcggcggcgcgaaatctgca
gctgtcatcgactggcagaaactcgcctgcgccatcgccacgcgcagcgccttcagcatc
atcaccggcggcccgggtaccggtaaaaccaccacggtggtgcgcttgctcgcgttgctg
caggcaccggctgtcgaggctggccatccgctgcgcattcgtctggcggcaccgaccggc
aaggccgccgcgcgcttgaccgagtcgatcagtcagcaagtgcaatctttgcaagtcgcc
gaagcggtgcgcacggcgatccccagcgatgtgaccaccgtgcaccgtttgctcggcagt
cgaccgggtacccggcatttccgtcaccatgccggtaatcgattaccgctggatgttctg
gtggtcgacgaagcctcgatgatcgacttggaaatgatggccaacttgctcgacgccatg
ccggcccatgcgcggctggtactgctgggcgacaaggatcagttggcctcggtcgaggcc
ggtgcggtgttgggcgatctgtgtcgtgatgccgagggcggttggtacagcccgcagacc
cgacaatggctggagtcggtcagtggcgagtcgttgcagggcagcggtttgcatgaagac
cgcgacggcacccatccgctcgcgcagcaagtggtgatgctgcggcactcgcgccgcttc
ggcgagggcagcggcatcggtcagctcgcgcgccgggtcaatcagcaattggccgacgag
gcgcgacagttgctcgcggccggcagctacgatgatgtgtattcgctgccgctcaaaggc
gagcacgatcacaagctcgaacgcctcttgctcgaaggtcaccgcaacggcccgcaaggt
tatcgccattacttgagcgtactgcgcgatcagcgtccatcatcgacgcggcctcttgag
catgcggactggaccgattgggcgcgggaagtcttgcaggcgttcgatacgttccagttg
ctgtgcgcggtgcgcaaagggccgtggggcgttgaaggtctgaaccagcgcatcaccgct
gcgttgctcaaggcgcgtctgatcgagagcgatcagcagtggtatgaaggtcgcccggtg
ctgatgactcgtaacgactatggtctgggcctgatgaacggcgacatcggcatcgccctg
aaactgcccgagcgtgaaggcgcagagatcggcaaaacggttctgcgcgtggcttttccg
cgtaacgatggacagggcggcgtgcgcttcgtgttgccgagtcggctcaatgatgttgaa
accgtgtacgccatgacggtgcacaagtcccagggttcggagttcgcccacacggcgctg
atcctgccggatgcgttgaaccccgtgctgaccaaagaactcatctacaccggaattact
cgcgcccggtactggttcaccttgatcgagccacgtgccggcgtgtttgaggaagcggtg
cagcgcaaggtcaagcgtcttagcgggctgatgctggaactggaggagagcaacgagtct
cagggatga
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