Photobacterium atrarenae: NNL38_01525
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Entry
NNL38_01525 CDS
T10583
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
pate Photobacterium atrarenae
Brite
Messenger RNA biogenesis [BR:
pate03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NNL38_01525 (csrD)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UTV28030
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Position
1:306055..307983
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AA seq
642 aa
AA seq
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MRKASGMKLTNRLVAFVTLIVICAIFVIFIGGAVSFRKLGQDYLTHYLDGMVEVIDQELA
DPQGAKSLSRWLPKLLKASNVVELEIGSPSGVMYAYQGLQPINDPAVLHQGSYTLSHNPG
FTVKLKSIPPYTEFTYSIGAMSSITLAVVIIILGLMWGMNWLRQQLYGSELLEHRGRMIL
AGKVDDHAVGDEQEWPATASLALDQMIAELKDARQERSRFDTFIRTHTFLDQLTGAANRV
LFDSRLQSLVQEPETHGAVLMIRISDWDELLAERGKAVADELIQDVGMILSNLIQRYPDT
VLSRYFDAEFAILLPQQPAKEVKQFTHQLLKALDRLAPPSPLQPDNWCHIGVTYCASGDR
RGRIMDAAEMALRSAQLQGSNSWDTYQKAPQLEEGRGSVRWRSLLDQAFGNSAVVLYQQP
ALTLDQQVIHRELLARIPDEQGKLIKASHFLSAVTQVGYHTKMDKAVVAQALAMLKNGPV
GDALSVNVSVEALLEKAFVRWLRDELLQTPRTVLNRLSFEIAESSLVKHLDAIRPVTRML
VGLGCKLVVDQAGRTIVSTHYIKDVKADYIKLHRGLLRDIHQRQENQLFVRSMLGACANS
AAKVIAVGVENEQEWRVLQQLGVQGGQGRYFTSELPCGAKES
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaagcctcagggatgaagctgaccaaccgcctggtggcgtttgtgacgctcatt
gtgatttgtgccatttttgtcatttttattggcggtgccgtcagctttcgtaagctgggg
caggattatctgactcattacctggacgggatggttgaggtgatcgatcaggaactggct
gatccgcagggggccaagtccctgtcgcgctggctgcccaagctgctcaaagccagtaat
gtggtcgagctggagattggcagtccgtccggggtgatgtatgcctatcaaggactgcag
ccgatcaatgacccggctgtcctgcatcagggcagttataccctgagccacaaccccggc
tttacggttaagctgaagtcgatcccgccgtataccgaatttacctactctatcggggcg
atgtcttcgattactctggcggtggtgatcattatcctcggtctgatgtgggggatgaac
tggttgcgtcagcaactctacggctcagaattgctcgagcatcgtgggcggatgattctg
gccggcaaagtggacgatcatgcggtgggcgatgagcaggagtggccggcgacagccagc
ctggcgttggatcagatgattgctgagctcaaagatgcccgccaggagcgcagccgcttt
gacacctttatccgtacccacacttttctcgatcagctcaccggtgctgccaaccgggtc
ttgtttgacagccggctgcaatcattggtgcaggagccggaaacccatggcgcagtgctg
atgatccggatttcggactgggacgagttgctggccgaacggggcaaagccgtggcggat
gagctgattcaggatgtcgggatgatcctctccaacctgatccagcgttatcctgatacc
gtcctgtcgcgctattttgatgccgagtttgccatcttgttgccgcagcagccagccaaa
gaggtgaagcagtttacccatcagttgctcaaagcgctggatcggctggcccccccgtcg
ccgctgcaaccggataactggtgccacatcggggtgacctactgtgccagcggcgatcgc
cgggggcggatcatggatgctgcagagatggcgctgcgcagcgcgcaactgcagggttct
aatagctgggatacttatcagaaagcaccgcagcttgaagagggccggggtagtgtccgc
tggcggagcctgctggatcaggcgtttggcaacagcgctgtagtactctatcagcaaccg
gcgctgacgttggatcagcaggtgatccaccgtgagctgttggcccgaattcctgatgag
caaggtaagctgatcaaagcgtctcatttcttaagtgccgttactcaggtcggctatcac
accaaaatggacaaggctgtggtggcgcaggcgcttgcgatgctcaaaaatgggccggtc
ggagatgccctctccgtgaatgtcagtgttgaagcgctgttagagaaggcgtttgtacgc
tggttgcgtgatgagttgctgcagaccccaagaaccgtgctgaaccggctgtcatttgaa
attgcggagagcagtctggtgaagcatctcgatgccattcgcccggtgacccggatgctg
gtgggactgggttgtaagctggtggttgatcaggctggtcgcacgattgtcagtacccat
tacatcaaagatgtgaaggccgattacatcaaactgcaccgggggttgctgcgggatatt
catcaacgacaggagaaccagctgtttgtccgtagtatgctgggcgcctgtgccaactcg
gcggcaaaagtgattgcggttggggttgaaaatgagcaggaatggcgggtattgcaacaa
cttggggttcagggcggccaagggcgttatttcaccagcgagctgccgtgtggtgcgaaa
gagagctga
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