Photobacterium atrarenae: NNL38_02860
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Entry
NNL38_02860 CDS
T10583
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pate Photobacterium atrarenae
Pathway
pate03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pate00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NNL38_02860 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pate03400
]
NNL38_02860 (recD)
Enzymes [BR:
pate01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NNL38_02860 (recD)
DNA repair and recombination proteins [BR:
pate03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NNL38_02860 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
SH3_13
AAA_11
Viral_helicase1
Helicase_RecD
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
nSTAND3
DEAD
CbiA
AAA_28
UvrD_C
TrwB_AAD_bind
T2SSE
TraI_hel_assoc_N
MukB
SRP54
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
UTV28243
LinkDB
All DBs
Position
1:570911..573022
Genome browser
AA seq
703 aa
AA seq
DB search
MLKQLESLTRLGAIRPLDSQFARFIATSVAAEDPETLQPLITLAAALASYELGRGHVCLP
LARLDGQHLFGLNRELSAQLSEGLPAIGEWENLLGASAAVSDGSEATPLVLAQGRLYLHR
YWQYEQTVAQRLRQAAQGVTTEMAESAQMATELDTLFARSYAYLFQDLQQLRGSSSDSSQ
ARQLAVCDKLDVVAPESLDWAVIDAVLTSATQVKDLTALDALIPLSACLNWQKVAAAVAL
TRQFAVISGGPGTGKTTTVAKLLAALVTQAMQQGERDPQGQMLLPETKLPEIKLVAPTGK
AAARLTESIGAAVASLTVDAAVKEAIPTQSSTLHRLLGAIPERVAFRHHRDNPLHLDVLV
VDEASMVDLPMMARLLDALPPHARLILLGDRDQLASVEAGAVLGDICAFAGQGYSPAHSQ
LLSQLTGFAFAPGNGEQSVVSDSLCMLQKSYRFHAQSGIGQLAKAINAGQPHLVDQVWQQ
GYADIQFHPLTTDHYQAMINRTVTFYINYLDGIRDDLPPGDVLKAFSQARLLCALRDGDF
GVTGLNQRIERALAKRGRIKPDDETWYLGRPIMITRNDHGLGLYNGDIGIVMRDPAADPE
SGERRLRVFFEMPDGSIRGVLPSRLPEHETVYAMTIHKSQGSEFADTLMVLPAEFSPILT
RELIYTGVTRAKKNLYLYAQPEVVSRAVRLRTERASGLAQLLA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaacagcttgaatcactgacccgactgggggctatccgtccgctggattcacag
tttgcccgttttattgccacctccgttgcggccgaagatcccgaaacacttcagcctctg
atcaccttggccgctgcgttggcgagttacgagctggggcgcggccatgtctgtttgccg
ctggcccggctcgacgggcagcacttgtttggcctcaatcgtgagttgagcgctcagctg
agtgaaggattacctgctatcggggagtgggaaaatctgttgggggcatccgcggcggtg
tcggacggcagcgaagcgacgccgctggtgctggctcagggccgcttgtatctccatcgc
tactggcaatatgagcagacggtggcgcagcggttgcgccaggcggcgcagggcgtgacc
actgaaatggccgagagcgcccagatggcgaccgagctggataccctgtttgcgcgtagt
tatgcctacctgtttcaggacttgcaacagttgcgggggtcatcatccgactcgtcgcag
gcccggcagctggcggtgtgtgacaagctggacgtggtggcgccggagtcactggactgg
gccgtgattgatgcggtgctgacgtcggcgacgcaggtgaaggatttaaccgcgctggat
gccctgatcccgctgtcggcttgcttgaactggcagaaagtcgcggcggcggtggccctg
acccggcagtttgcggtaatttccggcggaccggggaccggaaagaccaccacggttgct
aagctgctggccgcgctggtgactcaggcgatgcaacagggcgagcgtgatccacagggc
cagatgctgttgccggaaaccaagttgccggagatcaagctagtggcgccgaccggtaaa
gcggcggcacgactgaccgaatccattggtgcggcggtggcctcgctgaccgttgacgcg
gcggtgaaggaagcgatcccgacccagtccagtaccttacaccgcctgctgggggcgatc
cccgagcgggtggcgtttcgtcatcaccgcgacaacccgttgcacctggatgtgctggtg
gtcgatgaagcctcgatggtcgatttgccgatgatggcgcgtttgctggatgcgctgccg
ccgcatgcccggctgatcctgctcggtgatcgggatcagctggcgtcggtggaagccggt
gcggtgctgggggatatctgcgcctttgccgggcaaggctacagcccggcgcacagccag
ttgctcagtcagttgaccgggtttgcgtttgcccccgggaatggcgagcagagtgtggtg
agcgacagcctgtgtatgctgcaaaaaagttaccgcttccatgctcagtccggtattggt
cagctggccaaagcgatcaacgccggtcagccgcatttggtagatcaggtgtggcagcag
ggctatgcggatattcaattccatccgctgaccactgaccattaccaggcgatgatcaac
cggacggtgaccttttatatcaattatctcgatgggatccgggacgacttgccgccgggc
gacgtactcaaagcattttcacaggcgcgtctgctgtgcgcgctgcgggatggggatttc
ggcgtcaccgggttgaaccagcgtattgagcgagcgctggcgaaacgaggtcggatcaaa
ccggacgatgaaacctggtatctggggcgtccgattatgatcacccgcaatgatcacggc
ctcgggctgtataacggcgatatcggcatcgtgatgcgcgatccggcggcggatccagag
agcggcgagcgtcggctgcgggtgttttttgaaatgccggatggctcgatccgtggtgtg
ctgccgagccggttgccagagcatgaaaccgtctacgcgatgacgatccataaatcccag
ggctcggaatttgctgataccctgatggtgttgccggccgagttcagcccgatcctgacc
cgtgagctgatctacaccggggtgacccgggccaagaaaaatctgtatctgtacgcccag
ccggaggtggtcagtcgtgcggtgcgactgcggaccgagcgggccagtggtctggcccag
ttgttggcgtaa
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integrated database retrieval system
