Photobacterium atrarenae: NNL38_06200
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Entry
NNL38_06200 CDS
T10583
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pate Photobacterium atrarenae
Pathway
pate03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pate00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNL38_06200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pate03019
]
NNL38_06200
Enzymes [BR:
pate01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NNL38_06200
Messenger RNA biogenesis [BR:
pate03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NNL38_06200
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UTV28829
UniProt:
A0ABY5GI78
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All DBs
Position
1:complement(1313197..1314621)
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AA seq
474 aa
AA seq
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MGFTSLGLSAPILKAVQDKGYDTPSAIQAQAIPAVVAGKDVMAAAQTGTGKTAAFTLPIL
ERLSNGPKAKGNQIRALVLTPTRELAAQIQDNLVQYSRHLPLSSAVVFGGVKVNPQMMRL
RKGADVLVATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ
NLLFSATFSDEIRQLAKGLVNNPVEISVTPANSTAKTVEQCVYPADVKKKSSMLEKLIKD
GNWQQTLVFSRTKRGANRLSHFLNEQGITAAPIHGNKSQGARTRALADFKSGDIRVLVAT
DIAARGIDIPQLPQVVNFELPNVAEDYVHRIGRTGRAGEAGRAISLVCAAEAADLFGIER
LIQQVLPRLELEGFKPSNPVPASKLDTRPIKPKKPKKPKKPKADHRDGQRSGENARGHQP
TDKNKRHSDRQNRDGSAARNNRGANGNNAPKKSGAKPNPQRRRRPAGKTVAKAE
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctctctgggcctctccgctccaatcctcaaagccgttcaggataaagga
tacgatacaccgtcagccattcaggctcaggcaattccagctgtggttgcaggcaaagat
gtcatggctgccgcgcaaaccggcaccggcaaaactgccgcgtttacactcccaatcctg
gagcgcttgagcaatggacctaaggcgaaggggaaccagatccgggcattggtactgacc
ccaacccgtgagctggccgcccagatacaagataacctggtgcagtacagtcgccatctg
cccttaagctcagcggttgtcttcggcggtgtgaaggtcaacccgcaaatgatgcgacta
cgcaaaggcgccgatgtgctagtcgccacccccggccgcctgatggacttgtacagccag
aatgcggtcaagtttgaccagctggaagtgctggtgctggacgaagcggaccgcatgctg
gacatgggctttattcgcgatatccggaaaattctggccctgttaccggccaagcgtcag
aatctgctgttctccgccaccttctccgatgaaattcgccagctcgccaaagggttggtc
aacaatccggtggaaatctcggtaacgccggcaaactcgaccgcgaaaaccgtcgagcaa
tgcgtttacccggcagacgtgaagaaaaagtcgtcgatgctggagaagctgatcaaagac
ggcaactggcaacaaacgctggtcttcagccggaccaaacgcggtgccaaccgcctgtcc
cattttctgaatgaacaaggtatcactgcggccccaattcatggcaataaaagtcagggt
gcccggacccgcgcgctcgccgattttaaatccggtgacattcgcgtgctggttgccacc
gatattgccgcccgaggcattgacatcccacagctgcctcaggtcgtcaactttgaactt
ccgaatgtcgcagaagactatgtccaccgcattggccggactggtcgtgctggtgaagca
ggtcgggcaatttcattagtttgtgccgctgaagctgccgatctgttcgggattgagcgc
ctgatccagcaggttctaccgcgcctggagcttgaaggtttcaaaccatccaacccggta
ccggcgtcaaagctggatacgcgcccgatcaaaccgaaaaaacctaagaagccgaagaag
cccaaagccgaccatcgcgacggtcaacgctccggagaaaacgctcggggccatcaacca
acggataaaaacaaacgccatagcgaccgccagaatcgtgacggaagcgctgcccgcaac
aaccgtggcgccaatggcaacaatgcgccgaaaaaatcaggtgcaaagccgaacccacaa
cgtcgacgccgcccggctgggaaaactgtagcaaaagccgagtaa
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