Photobacterium atrarenae: NNL38_07450
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Entry
NNL38_07450 CDS
T10583
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pate Photobacterium atrarenae
Pathway
pate03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pate00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNL38_07450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pate03019
]
NNL38_07450
Enzymes [BR:
pate01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NNL38_07450
Messenger RNA biogenesis [BR:
pate03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NNL38_07450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UTV29055
LinkDB
All DBs
Position
1:1567988..1569259
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AA seq
423 aa
AA seq
DB search
MSFHALGLQSQLVETVTRLGFETPTPVQQQAIPEVLAGHDILAGAQTGTGKTAAFGLPLL
HRLMDTGSDSLPEARDAAGTPARVRALILTPTRELAQQVYDNITAYSEGTGVKTVVAYGG
TSMKMQVAALRQGVDILIATPGRLLDHAHVRTIDLADVQYLVLDEADRMLDMGFIDDIKR
IIRRMKSARQTLFFSATFAGPVKKLAYSILQEPKLIEVTPSNSTAVTVEQMVYPVDKHRK
QELLAYLIGSRNWQQVLVFTKTKQGAEALAKELKLDGIKAVSIHGDKSQGARQRSLDEFK
SGKARVLVATDVAARGIDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGKTGYAVSLMSLD
EEWALRAIEDLLDTRLPQQWLEGYEPDPTIEPPEHQRRGRSADKRRAKARAKVHQGRGRK
RRV
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttcatgccctggggctgcaaagccagctcgtcgaaaccgtgacccgattgggt
ttcgaaaccccgacccctgttcagcaacaagcgatccctgaagtgctggccgggcatgat
attctggcgggtgcccagaccgggaccgggaagaccgcagcgtttggcttgccgctgctg
catcgcctgatggataccggcagtgacagtttaccggaagcgcgcgatgcggccggcact
ccggcccgcgtccgggcgttgatcctgactccgacccgggagctggcccagcaggtgtat
gacaatatcacggcctacagtgaaggtaccggggtgaaaactgtggtcgcttatggcggc
actagtatgaaaatgcaggttgcggcgctgcgtcagggcgtggatatcctgattgccacg
cctggtcgtttgctggatcacgcccacgtgcgcaccatcgacttggcagatgtgcaatat
ctggtgctggatgaagcggaccggatgctggatatggggttcattgacgatatcaagcgg
attatccggcggatgaagtcggcccgtcagaccctgtttttctcggcaacctttgccggg
ccggtgaaaaagctggcgtatagtattttgcaagagccgaagctgattgaagtcacgccg
tcaaacagcacggccgtcacagtcgagcagatggtgtacccggtcgataaacaccgcaag
caagagctgctggcgtatctgatcggctcgcgcaactggcagcaggtgctggtgtttacc
aagaccaagcagggggcagaagcgctggcaaaagagctcaagcttgacggcattaaagcg
gtgtcgatccatggggataaaagccagggcgcgaggcagcgatccctggatgagtttaag
agcggtaaagcccgggtgttggtggcgacggatgtggcggcccgcgggattgatatcgag
cagctcgagtatgtggtgaacttcgatatgccgtttaaagcggaagattatgtgcatcgt
atcgggcgaaccggccgggccgggaaaaccggatatgcagtgtcactgatgagcctggat
gaagaatgggcgctgcgggccattgaagatctgctcgatacccggttgccgcagcaatgg
ttggaaggttacgagccggacccgaccattgaaccgccggaacatcagcgccggggacgc
tcagcggacaaacgccgcgccaaagcacgtgcgaaagtccaccaggggcgggggcgtaag
cgtcgggtgtga
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