Photobacterium atrarenae: NNL38_13960
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Entry
NNL38_13960 CDS
T10583
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pate Photobacterium atrarenae
Pathway
pate02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pate00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NNL38_13960 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pate03021
]
NNL38_13960 (rpoD)
Transcription machinery [BR:
pate03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NNL38_13960 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
UTV27410
UniProt:
A0ABY5GDT9
LinkDB
All DBs
Position
1:3015441..3017279
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPEDIVDSDQVEDIIQMINDMGIKVVETAP
DADDLMMTEDNADEDAIEAAAQALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPTAIAHLLEQFDKVEADELRLTDIISGFVDPNEEETAAPTATH
IGSELSEADLEDEDKDLEDDSDDDEEEDTGIDPELAREKFDDLRVTYEKMALAINTYGRN
DPKTVQAVEELSDVFKQFRLIPKQFDKLVSSLRESMDRVRTNERLIMRMCVDNSKMPKKT
FVTLFAGNEASTEWIDEALNSGKPYAERLKTYEEELRRCCTKLRMLEEDTGLSVERIKDI
SRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPE
ELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDAATATNLR
MATNEVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSDVLRSFLDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaatccgcagtctcagctgaagttacttgtcgccaagggcaaggaacaaggc
tatctgacctacgccgaagtaaatgaccacctaccggaggatatcgttgattccgatcag
gtggaagacattattcagatgattaatgacatggggattaaggtggtggaaaccgcccct
gatgccgatgatctgatgatgactgaagataatgcggacgaagatgcgatagaagccgct
gctcaggcgctttccagtgttgagagcgaaattggccggacgacggacccggttcgcatg
tacatgcgtgaaatggggaccgttgagctgctgacgcgtgaaggcgaaatcgacatcgcg
aagcgcattgaagatgggattaaccaggttcagtgctcggtggccgaatacccgaccgcg
atcgctcacctgcttgaacaattcgataaagttgaagcagacgaactgcgcctgaccgat
attatctcaggcttcgttgacccgaacgaagaagaaaccgcagcgccgactgcgacccac
atcggctctgaactcagcgaagccgatctggaagatgaagacaaagatctcgaagacgac
agcgacgacgacgaagaagaagataccgggatcgatccggagctggcgcgcgagaaattt
gatgacctgcgcgtcacctacgaaaaaatggcgctggccattaacacctacggccgtaac
gatccgaagaccgttcaggccgtggaagagctgtctgacgtattcaagcagttccgcctg
atcccgaaacagttcgacaagctggtgagctcgctgcgtgaatccatggatcgcgtgcgt
accaacgagcgcctgatcatgcgcatgtgtgtcgacaacagtaagatgccgaagaaaacc
tttgtcaccctgtttgccggcaacgaagcttctaccgagtggatcgacgaagccctgaac
tcaggcaagccgtatgctgagcgcctgaaaacgtacgaagaagagctacgtcgctgctgc
accaagctgcggatgctggaagaagataccggcctgtcggttgagcggatcaaagacatc
agccgtcgcatgtcgattggtgaagccaaagctcgccgcgcgaagaaagaaatggttgaa
gccaacctgcgtctggttatttcgattgccaagaaatacaccaaccgcggtctgcagttc
ctggacctgatccaggaagggaacatcggcctgatgaaggcggtcgataagttcgaatac
cgtcgtggttacaagttctcgacctacgccacctggtggatccgtcaggcgatcacccgt
tcgattgccgaccaggcgcggaccatccggattccggttcacatgatcgaaaccatcaac
aaactgaaccgcatctcgcgtcagatgctgcaggagatgggccgtgagccgctgccggaa
gagctggcagagcgcatgcaaatgccggaagacaagatccgtaaggtactgaagattgcc
aaagagccaatctcgatggaaaccccaatcggtgatgatgaagattcacatctgggcgat
ttcattgaagacaccacgcttcagctgccaatggatgccgccacggcgaccaacctgcgg
atggcaaccaacgaagtgctggccggcctgacgccgcgtgaagccaaggtgctgcggatg
cgtttcggcatcgacatgaacaccgaccacacgctggaagaagtcggtaagcagtttgac
gtcacccgtgagcggatccgtcagattgaagccaaagccctgcgtaaactgcgccaccca
agccgttccgacgtgctgcgcagcttcctggacgagtaa
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