Photobacterium atrarenae: NNL38_23010
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Entry
NNL38_23010 CDS
T10583
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pate Photobacterium atrarenae
Pathway
pate03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pate00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNL38_23010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pate03019
]
NNL38_23010
03009 Ribosome biogenesis [BR:
pate03009
]
NNL38_23010
Enzymes [BR:
pate01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NNL38_23010
Messenger RNA biogenesis [BR:
pate03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NNL38_23010
Ribosome biogenesis [BR:
pate03009
]
Prokaryotic type
rRNA helicases
NNL38_23010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UTV29878
LinkDB
All DBs
Position
2:1585971..1587869
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AA seq
632 aa
AA seq
DB search
MQESVTEFRQLDLADTLLSALDTMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAF
SLPLLNKLDLDQRKPQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVKDLISRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET
AQRVLFSATMPPIVKEIVDRFLREPARIDVAGENRTVSKVEQQFWVVKGVEKDEAMMRLL
ETEDTDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTI
ERVTKSRMEEIQLPLRDVVAASRLSRLGEELEAQKEEASLESFVELVEKLQEGIEVDATT
LAAMLLKRQQGNRPLFYKGPDPMIAAIEREKQRRDRRRDERGGERGERGERRERRSFNTA
DWDTYQLQVGREQGVQVKDIVGAIANELGLNKDSIGAIKLAPEHTYVQLPKKMTNEVVSQ
LKKLRIRQKEAQAVVVEDDVLREHRRGGRDGNRGGFRGNGNREGGRGRRDGERRFDRNRG
GDHRGSYRGERNHGNGNDRRRGERSSKPRFEA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatctgttacagaatttcgccagttagatctggccgacacactactatccgca
cttgacactatgggcttcgttgcgccgactcctattcaggcggcgtctattcctctcttg
ctaaccggtactgatgcgctgggtaaagcgcagacgggtactggtaaaactgcggcattc
tctctgccgctgctgaacaagctggatcttgaccagcgtaaaccacaagcaatcgtgatg
gcgccaacgcgtgagctggcaatccaggtggctgctgaaattaaagtccttggccaaaac
atcaagggcctgaaggttctggaaatctacggtggcgcatcgatcgttgatcaaatgcgt
gcgctgaaatcaggtgcacatatcgtggtgggtacaccaggtcgtgtgaaagatctgatc
tcccgtgatcgcttgcatctggacgaagtgcatactttcgtgctggatgaagccgacgaa
atgctgaaaatgggcttcgttgacgacgtgacctggatcatggagcaagcgcctgaaaca
gcgcagcgcgtactgttctccgccaccatgccgccgatcgtgaaagaaattgttgaccgc
ttcctgcgcgagcctgcgcgtatcgatgttgccggcgaaaaccgtacagtttcaaaagtt
gagcagcaattctgggtcgtgaagggcgtcgagaaagacgaagccatgatgcgtctgctg
gaaacagaagatacggatgcgtctatcgttttcgttcgtacccgtcaggatactgagcgt
ctggcggactggctgtctgcccgtggctttaaagcggctgccctgcacggtgatatcccg
caatcactgcgtgagcgtaccgttgagcacatcaagcgcggcgtgattgatatcctggtt
gcgaccgacgtggttgctcgtggtctggatgtgccgcgtattacgcacgtattcaactac
gacattccgttcgatgttgagtcatacattcaccgtatcggtcgtaccggccgtgcaggt
cgtaccggtaaagcgattctgttggttcgtaccaaccagatccgcatgctgcgtaccatc
gagcgtgtgaccaagtctcgcatggaagaaatccaactgccgctgcgtgacgtggttgcc
gcgtctcgtctgagccgtctgggtgaagagctggaagcacagaaagaagaagcgagcctg
gaatctttcgttgagctggttgagaagctgcaggaaggcattgaagttgatgcgaccacc
ctggctgcgatgctgctgaaacgtcagcagggcaaccgtccgctgttctataaaggcccg
gacccgatgattgcggccattgagcgtgagaagcagcgtcgtgaccgtcgccgcgacgag
cgtggtggtgaacgcggtgaacgtggtgagcgccgtgagcgtcgttcattcaacaccgct
gactgggatacgtaccaactgcaagttggccgtgagcagggtgttcaggtgaaagatatc
gttggcgctattgcgaacgagctgggtctgaacaaagacagcatcggtgcgatcaaactg
gcccctgagcacacgtatgttcagttgccgaagaagatgaccaacgaagttgtctcacag
ctgaagaaactgcgtattcgccagaaagaagcgcaagcggttgtggttgaagatgacgtg
ctgcgtgagcaccgtcgtggtggccgtgatggtaaccgtggtggtttccgtggcaacggt
aaccgtgaaggtggtcgtggtcgtcgtgacggtgagcgtcgctttgaccgtaaccgtggt
ggtgatcaccgtggcagctaccgtggtgagcgtaaccatggcaacggtaatgaccgtcgt
cgcggtgagcgtagcagcaagccacgtttcgaagcttaa
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