KEGG   PATHWAY: alf01100
Entry
alf01100                    Pathway                                
Name
Metabolic pathways - Agrobacterium larrymoorei
Class
Pathway map
alf01100  Metabolic pathways
alf01100

Module
alf_M00002  Glycolysis, core module involving three-carbon compounds [PATH:alf01100]
alf_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:alf01100]
alf_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:alf01100]
alf_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:alf01100]
alf_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:alf01100]
alf_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:alf01100]
alf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:alf01100]
alf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:alf01100]
alf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:alf01100]
alf_M00015  Proline biosynthesis, glutamate => proline [PATH:alf01100]
alf_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:alf01100]
alf_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:alf01100]
alf_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:alf01100]
alf_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:alf01100]
alf_M00021  Cysteine biosynthesis, serine => cysteine [PATH:alf01100]
alf_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:alf01100]
alf_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:alf01100]
alf_M00026  Histidine biosynthesis, PRPP => histidine [PATH:alf01100]
alf_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:alf01100]
alf_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:alf01100]
alf_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:alf01100]
alf_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:alf01100]
alf_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:alf01100]
alf_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:alf01100]
alf_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:alf01100]
alf_M00082  Fatty acid biosynthesis, initiation [PATH:alf01100]
alf_M00083  Fatty acid biosynthesis, elongation [PATH:alf01100]
alf_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:alf01100]
alf_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:alf01100]
alf_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:alf01100]
alf_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:alf01100]
alf_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:alf01100]
alf_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:alf01100]
alf_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:alf01100]
alf_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:alf01100]
alf_M00149  Succinate dehydrogenase, prokaryotes [PATH:alf01100]
alf_M00151  Cytochrome bc1 complex respiratory unit [PATH:alf01100]
alf_M00155  Cytochrome c oxidase, prokaryotes [PATH:alf01100]
alf_M00156  Cytochrome c oxidase, cbb3-type [PATH:alf01100]
alf_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:alf01100]
alf_M00169  CAM (Crassulacean acid metabolism), light [PATH:alf01100]
alf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:alf01100]
alf_M00417  Cytochrome o ubiquinol oxidase [PATH:alf01100]
alf_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:alf01100]
alf_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:alf01100]
alf_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:alf01100]
alf_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:alf01100]
alf_M00555  Betaine biosynthesis, choline => betaine [PATH:alf01100]
alf_M00565  Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:alf01100]
alf_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:alf01100]
alf_M00621  Glycine cleavage system [PATH:alf01100]
alf_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:alf01100]
alf_M00793  dTDP-L-rhamnose biosynthesis [PATH:alf01100]
alf_M00844  Arginine biosynthesis, ornithine => arginine [PATH:alf01100]
alf_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:alf01100]
alf_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:alf01100]
alf_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:alf01100]
alf_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:alf01100]
alf_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:alf01100]
alf_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:alf01100]
alf_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:alf01100]
alf_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:alf01100]
alf_M00970  Proline degradation, proline => glutamate [PATH:alf01100]
alf_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:alf01100]
Organism
Agrobacterium larrymoorei [GN:alf]
Related
pathway
alf00010  Glycolysis / Gluconeogenesis
alf00020  Citrate cycle (TCA cycle)
alf00030  Pentose phosphate pathway
alf00040  Pentose and glucuronate interconversions
alf00051  Fructose and mannose metabolism
alf00052  Galactose metabolism
alf00053  Ascorbate and aldarate metabolism
alf00061  Fatty acid biosynthesis
alf00071  Fatty acid degradation
alf00130  Ubiquinone and other terpenoid-quinone biosynthesis
alf00190  Oxidative phosphorylation
alf00220  Arginine biosynthesis
alf00230  Purine metabolism
alf00240  Pyrimidine metabolism
alf00250  Alanine, aspartate and glutamate metabolism
alf00260  Glycine, serine and threonine metabolism
alf00261  Monobactam biosynthesis
alf00270  Cysteine and methionine metabolism
alf00280  Valine, leucine and isoleucine degradation
alf00290  Valine, leucine and isoleucine biosynthesis
alf00300  Lysine biosynthesis
alf00310  Lysine degradation
alf00330  Arginine and proline metabolism
alf00332  Carbapenem biosynthesis
alf00340  Histidine metabolism
alf00350  Tyrosine metabolism
alf00360  Phenylalanine metabolism
alf00361  Chlorocyclohexane and chlorobenzene degradation
alf00362  Benzoate degradation
alf00364  Fluorobenzoate degradation
alf00380  Tryptophan metabolism
alf00400  Phenylalanine, tyrosine and tryptophan biosynthesis
alf00401  Novobiocin biosynthesis
alf00410  beta-Alanine metabolism
alf00430  Taurine and hypotaurine metabolism
alf00440  Phosphonate and phosphinate metabolism
alf00450  Selenocompound metabolism
alf00460  Cyanoamino acid metabolism
alf00470  D-Amino acid metabolism
alf00480  Glutathione metabolism
alf00500  Starch and sucrose metabolism
alf00511  Other glycan degradation
alf00520  Amino sugar and nucleotide sugar metabolism
alf00521  Streptomycin biosynthesis
alf00523  Polyketide sugar unit biosynthesis
alf00525  Acarbose and validamycin biosynthesis
alf00540  Lipopolysaccharide biosynthesis
alf00541  O-Antigen nucleotide sugar biosynthesis
alf00543  Exopolysaccharide biosynthesis
alf00550  Peptidoglycan biosynthesis
alf00552  Teichoic acid biosynthesis
alf00561  Glycerolipid metabolism
alf00562  Inositol phosphate metabolism
alf00564  Glycerophospholipid metabolism
alf00600  Sphingolipid metabolism
alf00620  Pyruvate metabolism
alf00622  Xylene degradation
alf00623  Toluene degradation
alf00624  Polycyclic aromatic hydrocarbon degradation
alf00625  Chloroalkane and chloroalkene degradation
alf00626  Naphthalene degradation
alf00627  Aminobenzoate degradation
alf00630  Glyoxylate and dicarboxylate metabolism
alf00633  Nitrotoluene degradation
alf00640  Propanoate metabolism
alf00643  Styrene degradation
alf00650  Butanoate metabolism
alf00660  C5-Branched dibasic acid metabolism
alf00670  One carbon pool by folate
alf00680  Methane metabolism
alf00710  Carbon fixation by Calvin cycle
alf00720  Other carbon fixation pathways
alf00730  Thiamine metabolism
alf00740  Riboflavin metabolism
alf00750  Vitamin B6 metabolism
alf00760  Nicotinate and nicotinamide metabolism
alf00770  Pantothenate and CoA biosynthesis
alf00780  Biotin metabolism
alf00785  Lipoic acid metabolism
alf00790  Folate biosynthesis
alf00791  Atrazine degradation
alf00860  Porphyrin metabolism
alf00900  Terpenoid backbone biosynthesis
alf00906  Carotenoid biosynthesis
alf00907  Pinene, camphor and geraniol degradation
alf00910  Nitrogen metabolism
alf00920  Sulfur metabolism
alf00930  Caprolactam degradation
alf00946  Degradation of flavonoids
alf00999  Biosynthesis of various plant secondary metabolites
alf01040  Biosynthesis of unsaturated fatty acids
KO pathway
ko01100   
LinkDB

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