PATHWAY: arui01100 Help Entry arui01100                   Pathway                                 Name Metabolic pathways - Agrobacterium rubi Class BRITE hierarchy Pathway map arui01100   Metabolic pathways Module arui_M00002   Glycolysis, core module involving three-carbon compounds [PATH:arui01100] arui_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:arui01100] arui_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:arui01100] arui_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:arui01100] arui_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:arui01100] arui_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:arui01100] arui_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:arui01100] arui_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arui01100] arui_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:arui01100] arui_M00012   Glyoxylate cycle [PATH:arui01100] arui_M00015   Proline biosynthesis, glutamate => proline [PATH:arui01100] arui_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:arui01100] arui_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:arui01100] arui_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:arui01100] arui_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:arui01100] arui_M00021   Cysteine biosynthesis, serine => cysteine [PATH:arui01100] arui_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:arui01100] arui_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:arui01100] arui_M00026   Histidine biosynthesis, PRPP => histidine [PATH:arui01100] arui_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:arui01100] arui_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:arui01100] arui_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:arui01100] arui_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:arui01100] arui_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:arui01100] arui_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:arui01100] arui_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:arui01100] arui_M00082   Fatty acid biosynthesis, initiation [PATH:arui01100] arui_M00083   Fatty acid biosynthesis, elongation [PATH:arui01100] arui_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:arui01100] arui_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:arui01100] arui_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:arui01100] arui_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:arui01100] arui_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:arui01100] arui_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:arui01100] arui_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:arui01100] arui_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:arui01100] arui_M00149   Succinate dehydrogenase, prokaryotes [PATH:arui01100] arui_M00151   Cytochrome bc1 complex respiratory unit [PATH:arui01100] arui_M00155   Cytochrome c oxidase, prokaryotes [PATH:arui01100] arui_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:arui01100] arui_M00169   CAM (Crassulacean acid metabolism), light [PATH:arui01100] arui_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arui01100] arui_M00417   Cytochrome o ubiquinol oxidase [PATH:arui01100] arui_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:arui01100] arui_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:arui01100] arui_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:arui01100] arui_M00555   Betaine biosynthesis, choline => betaine [PATH:arui01100] arui_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:arui01100] arui_M00621   Glycine cleavage system [PATH:arui01100] arui_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:arui01100] arui_M00793   dTDP-L-rhamnose biosynthesis [PATH:arui01100] arui_M00844   Arginine biosynthesis, ornithine => arginine [PATH:arui01100] arui_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:arui01100] arui_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:arui01100] arui_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:arui01100] arui_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:arui01100] arui_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:arui01100] arui_M00939   Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:arui01100] arui_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:arui01100] arui_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:arui01100] arui_M00970   Proline degradation, proline => glutamate [PATH:arui01100] arui_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:arui01100] Organism Agrobacterium rubi [GN:arui] Related pathway arui00010   Glycolysis / Gluconeogenesis arui00020   Citrate cycle (TCA cycle) arui00030   Pentose phosphate pathway arui00040   Pentose and glucuronate interconversions arui00051   Fructose and mannose metabolism arui00052   Galactose metabolism arui00053   Ascorbate and aldarate metabolism arui00061   Fatty acid biosynthesis arui00071   Fatty acid degradation arui00130   Ubiquinone and other terpenoid-quinone biosynthesis arui00190   Oxidative phosphorylation arui00220   Arginine biosynthesis arui00230   Purine metabolism arui00240   Pyrimidine metabolism arui00250   Alanine, aspartate and glutamate metabolism arui00260   Glycine, serine and threonine metabolism arui00261   Monobactam biosynthesis arui00270   Cysteine and methionine metabolism arui00280   Valine, leucine and isoleucine degradation arui00290   Valine, leucine and isoleucine biosynthesis arui00300   Lysine biosynthesis arui00310   Lysine degradation arui00330   Arginine and proline metabolism arui00332   Carbapenem biosynthesis arui00340   Histidine metabolism arui00350   Tyrosine metabolism arui00360   Phenylalanine metabolism arui00361   Chlorocyclohexane and chlorobenzene degradation arui00362   Benzoate degradation arui00364   Fluorobenzoate degradation arui00380   Tryptophan metabolism arui00400   Phenylalanine, tyrosine and tryptophan biosynthesis arui00401   Novobiocin biosynthesis arui00410   beta-Alanine metabolism arui00430   Taurine and hypotaurine metabolism arui00440   Phosphonate and phosphinate metabolism arui00450   Selenocompound metabolism arui00460   Cyanoamino acid metabolism arui00470   D-Amino acid metabolism arui00480   Glutathione metabolism arui00500   Starch and sucrose metabolism arui00511   Other glycan degradation arui00520   Amino sugar and nucleotide sugar metabolism arui00521   Streptomycin biosynthesis arui00523   Polyketide sugar unit biosynthesis arui00525   Acarbose and validamycin biosynthesis arui00540   Lipopolysaccharide biosynthesis arui00541   O-Antigen nucleotide sugar biosynthesis arui00543   Exopolysaccharide biosynthesis arui00550   Peptidoglycan biosynthesis arui00552   Teichoic acid biosynthesis arui00561   Glycerolipid metabolism arui00562   Inositol phosphate metabolism arui00564   Glycerophospholipid metabolism arui00600   Sphingolipid metabolism arui00620   Pyruvate metabolism arui00622   Xylene degradation arui00623   Toluene degradation arui00624   Polycyclic aromatic hydrocarbon degradation arui00625   Chloroalkane and chloroalkene degradation arui00626   Naphthalene degradation arui00627   Aminobenzoate degradation arui00630   Glyoxylate and dicarboxylate metabolism arui00633   Nitrotoluene degradation arui00640   Propanoate metabolism arui00643   Styrene degradation arui00650   Butanoate metabolism arui00660   C5-Branched dibasic acid metabolism arui00670   One carbon pool by folate arui00680   Methane metabolism arui00710   Carbon fixation by Calvin cycle arui00720   Other carbon fixation pathways arui00730   Thiamine metabolism arui00740   Riboflavin metabolism arui00750   Vitamin B6 metabolism arui00760   Nicotinate and nicotinamide metabolism arui00770   Pantothenate and CoA biosynthesis arui00780   Biotin metabolism arui00785   Lipoic acid metabolism arui00790   Folate biosynthesis arui00791   Atrazine degradation arui00860   Porphyrin metabolism arui00900   Terpenoid backbone biosynthesis arui00903   Limonene degradation arui00906   Carotenoid biosynthesis arui00907   Pinene, camphor and geraniol degradation arui00910   Nitrogen metabolism arui00920   Sulfur metabolism arui00930   Caprolactam degradation arui00946   Degradation of flavonoids arui00996   Biosynthesis of various alkaloids arui00999   Biosynthesis of various plant secondary metabolites arui01040   Biosynthesis of unsaturated fatty acids arui01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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