KEGG   PATHWAY: atf01100
Entry
atf01100                    Pathway                                
Name
Metabolic pathways - Agrobacterium tumefaciens Ach5
Class
Pathway map
atf01100  Metabolic pathways
atf01100

Module
atf_M00002  Glycolysis, core module involving three-carbon compounds [PATH:atf01100]
atf_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:atf01100]
atf_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:atf01100]
atf_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:atf01100]
atf_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:atf01100]
atf_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:atf01100]
atf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:atf01100]
atf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:atf01100]
atf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:atf01100]
atf_M00012  Glyoxylate cycle [PATH:atf01100]
atf_M00015  Proline biosynthesis, glutamate => proline [PATH:atf01100]
atf_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:atf01100]
atf_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:atf01100]
atf_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:atf01100]
atf_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:atf01100]
atf_M00021  Cysteine biosynthesis, serine => cysteine [PATH:atf01100]
atf_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:atf01100]
atf_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:atf01100]
atf_M00026  Histidine biosynthesis, PRPP => histidine [PATH:atf01100]
atf_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:atf01100]
atf_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:atf01100]
atf_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:atf01100]
atf_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:atf01100]
atf_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:atf01100]
atf_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:atf01100]
atf_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:atf01100]
atf_M00082  Fatty acid biosynthesis, initiation [PATH:atf01100]
atf_M00083  Fatty acid biosynthesis, elongation [PATH:atf01100]
atf_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:atf01100]
atf_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:atf01100]
atf_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:atf01100]
atf_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:atf01100]
atf_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:atf01100]
atf_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:atf01100]
atf_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:atf01100]
atf_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:atf01100]
atf_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:atf01100]
atf_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:atf01100]
atf_M00149  Succinate dehydrogenase, prokaryotes [PATH:atf01100]
atf_M00151  Cytochrome bc1 complex respiratory unit [PATH:atf01100]
atf_M00155  Cytochrome c oxidase, prokaryotes [PATH:atf01100]
atf_M00156  Cytochrome c oxidase, cbb3-type [PATH:atf01100]
atf_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:atf01100]
atf_M00169  CAM (Crassulacean acid metabolism), light [PATH:atf01100]
atf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:atf01100]
atf_M00417  Cytochrome o ubiquinol oxidase [PATH:atf01100]
atf_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:atf01100]
atf_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:atf01100]
atf_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:atf01100]
atf_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:atf01100]
atf_M00555  Betaine biosynthesis, choline => betaine [PATH:atf01100]
atf_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:atf01100]
atf_M00621  Glycine cleavage system [PATH:atf01100]
atf_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:atf01100]
atf_M00793  dTDP-L-rhamnose biosynthesis [PATH:atf01100]
atf_M00844  Arginine biosynthesis, ornithine => arginine [PATH:atf01100]
atf_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:atf01100]
atf_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:atf01100]
atf_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:atf01100]
atf_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:atf01100]
atf_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:atf01100]
atf_M00919  Ectoine degradation, ectoine => aspartate [PATH:atf01100]
atf_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:atf01100]
atf_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:atf01100]
atf_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:atf01100]
atf_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:atf01100]
atf_M00970  Proline degradation, proline => glutamate [PATH:atf01100]
atf_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:atf01100]
Organism
Agrobacterium tumefaciens Ach5 [GN:atf]
Related
pathway
atf00010  Glycolysis / Gluconeogenesis
atf00020  Citrate cycle (TCA cycle)
atf00030  Pentose phosphate pathway
atf00040  Pentose and glucuronate interconversions
atf00051  Fructose and mannose metabolism
atf00052  Galactose metabolism
atf00053  Ascorbate and aldarate metabolism
atf00061  Fatty acid biosynthesis
atf00071  Fatty acid degradation
atf00130  Ubiquinone and other terpenoid-quinone biosynthesis
atf00190  Oxidative phosphorylation
atf00220  Arginine biosynthesis
atf00230  Purine metabolism
atf00240  Pyrimidine metabolism
atf00250  Alanine, aspartate and glutamate metabolism
atf00260  Glycine, serine and threonine metabolism
atf00261  Monobactam biosynthesis
atf00270  Cysteine and methionine metabolism
atf00280  Valine, leucine and isoleucine degradation
atf00290  Valine, leucine and isoleucine biosynthesis
atf00300  Lysine biosynthesis
atf00310  Lysine degradation
atf00330  Arginine and proline metabolism
atf00332  Carbapenem biosynthesis
atf00340  Histidine metabolism
atf00350  Tyrosine metabolism
atf00360  Phenylalanine metabolism
atf00361  Chlorocyclohexane and chlorobenzene degradation
atf00362  Benzoate degradation
atf00364  Fluorobenzoate degradation
atf00365  Furfural degradation
atf00380  Tryptophan metabolism
atf00400  Phenylalanine, tyrosine and tryptophan biosynthesis
atf00401  Novobiocin biosynthesis
atf00410  beta-Alanine metabolism
atf00430  Taurine and hypotaurine metabolism
atf00440  Phosphonate and phosphinate metabolism
atf00450  Selenocompound metabolism
atf00460  Cyanoamino acid metabolism
atf00470  D-Amino acid metabolism
atf00480  Glutathione metabolism
atf00500  Starch and sucrose metabolism
atf00511  Other glycan degradation
atf00520  Amino sugar and nucleotide sugar metabolism
atf00521  Streptomycin biosynthesis
atf00523  Polyketide sugar unit biosynthesis
atf00525  Acarbose and validamycin biosynthesis
atf00540  Lipopolysaccharide biosynthesis
atf00541  O-Antigen nucleotide sugar biosynthesis
atf00542  O-Antigen repeat unit biosynthesis
atf00543  Exopolysaccharide biosynthesis
atf00550  Peptidoglycan biosynthesis
atf00552  Teichoic acid biosynthesis
atf00561  Glycerolipid metabolism
atf00562  Inositol phosphate metabolism
atf00564  Glycerophospholipid metabolism
atf00600  Sphingolipid metabolism
atf00620  Pyruvate metabolism
atf00622  Xylene degradation
atf00623  Toluene degradation
atf00625  Chloroalkane and chloroalkene degradation
atf00626  Naphthalene degradation
atf00627  Aminobenzoate degradation
atf00630  Glyoxylate and dicarboxylate metabolism
atf00633  Nitrotoluene degradation
atf00640  Propanoate metabolism
atf00643  Styrene degradation
atf00650  Butanoate metabolism
atf00660  C5-Branched dibasic acid metabolism
atf00670  One carbon pool by folate
atf00680  Methane metabolism
atf00710  Carbon fixation by Calvin cycle
atf00720  Other carbon fixation pathways
atf00730  Thiamine metabolism
atf00740  Riboflavin metabolism
atf00750  Vitamin B6 metabolism
atf00760  Nicotinate and nicotinamide metabolism
atf00770  Pantothenate and CoA biosynthesis
atf00780  Biotin metabolism
atf00785  Lipoic acid metabolism
atf00790  Folate biosynthesis
atf00860  Porphyrin metabolism
atf00900  Terpenoid backbone biosynthesis
atf00903  Limonene degradation
atf00906  Carotenoid biosynthesis
atf00907  Pinene, camphor and geraniol degradation
atf00910  Nitrogen metabolism
atf00920  Sulfur metabolism
atf00930  Caprolactam degradation
atf00946  Degradation of flavonoids
atf00999  Biosynthesis of various plant secondary metabolites
atf01040  Biosynthesis of unsaturated fatty acids
atf01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

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