KEGG   PATHWAY: avf01100
Entry
avf01100                    Pathway                                
Name
Metabolic pathways - Agrobacterium vitis VAR03-1
Class
Pathway map
avf01100  Metabolic pathways
avf01100

Module
avf_M00002  Glycolysis, core module involving three-carbon compounds [PATH:avf01100]
avf_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:avf01100]
avf_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:avf01100]
avf_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:avf01100]
avf_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:avf01100]
avf_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:avf01100]
avf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:avf01100]
avf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:avf01100]
avf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:avf01100]
avf_M00012  Glyoxylate cycle [PATH:avf01100]
avf_M00015  Proline biosynthesis, glutamate => proline [PATH:avf01100]
avf_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:avf01100]
avf_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:avf01100]
avf_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:avf01100]
avf_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:avf01100]
avf_M00021  Cysteine biosynthesis, serine => cysteine [PATH:avf01100]
avf_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:avf01100]
avf_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:avf01100]
avf_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:avf01100]
avf_M00026  Histidine biosynthesis, PRPP => histidine [PATH:avf01100]
avf_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:avf01100]
avf_M00035  Methionine degradation [PATH:avf01100]
avf_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:avf01100]
avf_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:avf01100]
avf_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:avf01100]
avf_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:avf01100]
avf_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:avf01100]
avf_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:avf01100]
avf_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:avf01100]
avf_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:avf01100]
avf_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:avf01100]
avf_M00082  Fatty acid biosynthesis, initiation [PATH:avf01100]
avf_M00083  Fatty acid biosynthesis, elongation [PATH:avf01100]
avf_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:avf01100]
avf_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:avf01100]
avf_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:avf01100]
avf_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:avf01100]
avf_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:avf01100]
avf_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:avf01100]
avf_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:avf01100]
avf_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:avf01100]
avf_M00140  C1-unit interconversion, prokaryotes [PATH:avf01100]
avf_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:avf01100]
avf_M00149  Succinate dehydrogenase, prokaryotes [PATH:avf01100]
avf_M00151  Cytochrome bc1 complex respiratory unit [PATH:avf01100]
avf_M00155  Cytochrome c oxidase, prokaryotes [PATH:avf01100]
avf_M00156  Cytochrome c oxidase, cbb3-type [PATH:avf01100]
avf_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:avf01100]
avf_M00169  CAM (Crassulacean acid metabolism), light [PATH:avf01100]
avf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:avf01100]
avf_M00417  Cytochrome o ubiquinol oxidase [PATH:avf01100]
avf_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:avf01100]
avf_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:avf01100]
avf_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:avf01100]
avf_M00551  Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:avf01100]
avf_M00555  Betaine biosynthesis, choline => betaine [PATH:avf01100]
avf_M00565  Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:avf01100]
avf_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:avf01100]
avf_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:avf01100]
avf_M00621  Glycine cleavage system [PATH:avf01100]
avf_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:avf01100]
avf_M00793  dTDP-L-rhamnose biosynthesis [PATH:avf01100]
avf_M00844  Arginine biosynthesis, ornithine => arginine [PATH:avf01100]
avf_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:avf01100]
avf_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:avf01100]
avf_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:avf01100]
avf_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:avf01100]
avf_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:avf01100]
avf_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:avf01100]
avf_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:avf01100]
avf_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:avf01100]
avf_M00970  Proline degradation, proline => glutamate [PATH:avf01100]
avf_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:avf01100]
Organism
Agrobacterium vitis VAR03-1 [GN:avf]
Related
pathway
avf00010  Glycolysis / Gluconeogenesis
avf00020  Citrate cycle (TCA cycle)
avf00030  Pentose phosphate pathway
avf00040  Pentose and glucuronate interconversions
avf00051  Fructose and mannose metabolism
avf00052  Galactose metabolism
avf00053  Ascorbate and aldarate metabolism
avf00061  Fatty acid biosynthesis
avf00071  Fatty acid degradation
avf00074  Mycolic acid biosynthesis
avf00130  Ubiquinone and other terpenoid-quinone biosynthesis
avf00190  Oxidative phosphorylation
avf00220  Arginine biosynthesis
avf00230  Purine metabolism
avf00240  Pyrimidine metabolism
avf00250  Alanine, aspartate and glutamate metabolism
avf00260  Glycine, serine and threonine metabolism
avf00261  Monobactam biosynthesis
avf00270  Cysteine and methionine metabolism
avf00280  Valine, leucine and isoleucine degradation
avf00290  Valine, leucine and isoleucine biosynthesis
avf00300  Lysine biosynthesis
avf00310  Lysine degradation
avf00330  Arginine and proline metabolism
avf00332  Carbapenem biosynthesis
avf00340  Histidine metabolism
avf00350  Tyrosine metabolism
avf00360  Phenylalanine metabolism
avf00361  Chlorocyclohexane and chlorobenzene degradation
avf00362  Benzoate degradation
avf00364  Fluorobenzoate degradation
avf00380  Tryptophan metabolism
avf00400  Phenylalanine, tyrosine and tryptophan biosynthesis
avf00401  Novobiocin biosynthesis
avf00410  beta-Alanine metabolism
avf00430  Taurine and hypotaurine metabolism
avf00440  Phosphonate and phosphinate metabolism
avf00450  Selenocompound metabolism
avf00460  Cyanoamino acid metabolism
avf00470  D-Amino acid metabolism
avf00480  Glutathione metabolism
avf00500  Starch and sucrose metabolism
avf00511  Other glycan degradation
avf00520  Amino sugar and nucleotide sugar metabolism
avf00521  Streptomycin biosynthesis
avf00523  Polyketide sugar unit biosynthesis
avf00525  Acarbose and validamycin biosynthesis
avf00540  Lipopolysaccharide biosynthesis
avf00541  O-Antigen nucleotide sugar biosynthesis
avf00543  Exopolysaccharide biosynthesis
avf00550  Peptidoglycan biosynthesis
avf00552  Teichoic acid biosynthesis
avf00561  Glycerolipid metabolism
avf00562  Inositol phosphate metabolism
avf00564  Glycerophospholipid metabolism
avf00600  Sphingolipid metabolism
avf00620  Pyruvate metabolism
avf00622  Xylene degradation
avf00623  Toluene degradation
avf00625  Chloroalkane and chloroalkene degradation
avf00626  Naphthalene degradation
avf00627  Aminobenzoate degradation
avf00630  Glyoxylate and dicarboxylate metabolism
avf00633  Nitrotoluene degradation
avf00640  Propanoate metabolism
avf00643  Styrene degradation
avf00650  Butanoate metabolism
avf00660  C5-Branched dibasic acid metabolism
avf00670  One carbon pool by folate
avf00680  Methane metabolism
avf00710  Carbon fixation by Calvin cycle
avf00720  Other carbon fixation pathways
avf00730  Thiamine metabolism
avf00740  Riboflavin metabolism
avf00750  Vitamin B6 metabolism
avf00760  Nicotinate and nicotinamide metabolism
avf00770  Pantothenate and CoA biosynthesis
avf00780  Biotin metabolism
avf00785  Lipoic acid metabolism
avf00790  Folate biosynthesis
avf00791  Atrazine degradation
avf00860  Porphyrin metabolism
avf00900  Terpenoid backbone biosynthesis
avf00906  Carotenoid biosynthesis
avf00907  Pinene, camphor and geraniol degradation
avf00910  Nitrogen metabolism
avf00920  Sulfur metabolism
avf00930  Caprolactam degradation
avf00946  Degradation of flavonoids
avf00996  Biosynthesis of various alkaloids
avf00997  Biosynthesis of various other secondary metabolites
avf00999  Biosynthesis of various plant secondary metabolites
avf01040  Biosynthesis of unsaturated fatty acids
avf01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

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