PATHWAY: bae01100 Help Entry bae01100                    Pathway                                 Name Metabolic pathways - Bacillus atrophaeus Class BRITE hierarchy Pathway map bae01100   Metabolic pathways Module bae_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:bae01100] bae_M00002   Glycolysis, core module involving three-carbon compounds [PATH:bae01100] bae_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bae01100] bae_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bae01100] bae_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:bae01100] bae_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bae01100] bae_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bae01100] bae_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:bae01100] bae_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bae01100] bae_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bae01100] bae_M00015   Proline biosynthesis, glutamate => proline [PATH:bae01100] bae_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:bae01100] bae_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:bae01100] bae_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:bae01100] bae_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:bae01100] bae_M00021   Cysteine biosynthesis, serine => cysteine [PATH:bae01100] bae_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:bae01100] bae_M00026   Histidine biosynthesis, PRPP => histidine [PATH:bae01100] bae_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:bae01100] bae_M00034   Methionine salvage pathway [PATH:bae01100] bae_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:bae01100] bae_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:bae01100] bae_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:bae01100] bae_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:bae01100] bae_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bae01100] bae_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bae01100] bae_M00082   Fatty acid biosynthesis, initiation [PATH:bae01100] bae_M00083   Fatty acid biosynthesis, elongation [PATH:bae01100] bae_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:bae01100] bae_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:bae01100] bae_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:bae01100] bae_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:bae01100] bae_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:bae01100] bae_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:bae01100] bae_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:bae01100] bae_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:bae01100] bae_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:bae01100] bae_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:bae01100] bae_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:bae01100] bae_M00151   Cytochrome bc1 complex respiratory unit [PATH:bae01100] bae_M00155   Cytochrome c oxidase, prokaryotes [PATH:bae01100] bae_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:bae01100] bae_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:bae01100] bae_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bae01100] bae_M00345   Formaldehyde assimilation, ribulose monophosphate pathway [PATH:bae01100] bae_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:bae01100] bae_M00416   Cytochrome aa3-600 menaquinol oxidase [PATH:bae01100] bae_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:bae01100] bae_M00525   Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:bae01100] bae_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:bae01100] bae_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:bae01100] bae_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:bae01100] bae_M00555   Betaine biosynthesis, choline => betaine [PATH:bae01100] bae_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:bae01100] bae_M00573   Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin [PATH:bae01100] bae_M00577   Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin [PATH:bae01100] bae_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:bae01100] bae_M00609   Cysteine biosynthesis, methionine => cysteine [PATH:bae01100] bae_M00621   Glycine cleavage system [PATH:bae01100] bae_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:bae01100] bae_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:bae01100] bae_M00793   dTDP-L-rhamnose biosynthesis [PATH:bae01100] bae_M00844   Arginine biosynthesis, ornithine => arginine [PATH:bae01100] bae_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:bae01100] bae_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:bae01100] bae_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:bae01100] bae_M00883   Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:bae01100] bae_M00895   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/glycine) => TMP/TPP [PATH:bae01100] bae_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:bae01100] bae_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:bae01100] bae_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:bae01100] bae_M00926   Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:bae01100] bae_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:bae01100] bae_M00970   Proline degradation, proline => glutamate [PATH:bae01100] bae_M00972   Proline metabolism [PATH:bae01100] Organism Bacillus atrophaeus [GN:bae] Related pathway bae00010   Glycolysis / Gluconeogenesis bae00020   Citrate cycle (TCA cycle) bae00030   Pentose phosphate pathway bae00040   Pentose and glucuronate interconversions bae00051   Fructose and mannose metabolism bae00052   Galactose metabolism bae00053   Ascorbate and aldarate metabolism bae00061   Fatty acid biosynthesis bae00071   Fatty acid degradation bae00130   Ubiquinone and other terpenoid-quinone biosynthesis bae00190   Oxidative phosphorylation bae00220   Arginine biosynthesis bae00230   Purine metabolism bae00240   Pyrimidine metabolism bae00250   Alanine, aspartate and glutamate metabolism bae00260   Glycine, serine and threonine metabolism bae00261   Monobactam biosynthesis bae00270   Cysteine and methionine metabolism bae00280   Valine, leucine and isoleucine degradation bae00290   Valine, leucine and isoleucine biosynthesis bae00300   Lysine biosynthesis bae00310   Lysine degradation bae00311   Penicillin and cephalosporin biosynthesis bae00330   Arginine and proline metabolism bae00332   Carbapenem biosynthesis bae00340   Histidine metabolism bae00350   Tyrosine metabolism bae00360   Phenylalanine metabolism bae00361   Chlorocyclohexane and chlorobenzene degradation bae00362   Benzoate degradation bae00380   Tryptophan metabolism bae00400   Phenylalanine, tyrosine and tryptophan biosynthesis bae00401   Novobiocin biosynthesis bae00410   beta-Alanine metabolism bae00430   Taurine and hypotaurine metabolism bae00450   Selenocompound metabolism bae00460   Cyanoamino acid metabolism bae00470   D-Amino acid metabolism bae00480   Glutathione metabolism bae00500   Starch and sucrose metabolism bae00511   Other glycan degradation bae00520   Amino sugar and nucleotide sugar metabolism bae00521   Streptomycin biosynthesis bae00523   Polyketide sugar unit biosynthesis bae00525   Acarbose and validamycin biosynthesis bae00541   O-Antigen nucleotide sugar biosynthesis bae00542   O-Antigen repeat unit biosynthesis bae00543   Exopolysaccharide biosynthesis bae00550   Peptidoglycan biosynthesis bae00552   Teichoic acid biosynthesis bae00561   Glycerolipid metabolism bae00562   Inositol phosphate metabolism bae00564   Glycerophospholipid metabolism bae00592   alpha-Linolenic acid metabolism bae00620   Pyruvate metabolism bae00622   Xylene degradation bae00625   Chloroalkane and chloroalkene degradation bae00626   Naphthalene degradation bae00627   Aminobenzoate degradation bae00630   Glyoxylate and dicarboxylate metabolism bae00640   Propanoate metabolism bae00650   Butanoate metabolism bae00660   C5-Branched dibasic acid metabolism bae00670   One carbon pool by folate bae00680   Methane metabolism bae00710   Carbon fixation by Calvin cycle bae00720   Other carbon fixation pathways bae00730   Thiamine metabolism bae00740   Riboflavin metabolism bae00750   Vitamin B6 metabolism bae00760   Nicotinate and nicotinamide metabolism bae00770   Pantothenate and CoA biosynthesis bae00780   Biotin metabolism bae00785   Lipoic acid metabolism bae00790   Folate biosynthesis bae00860   Porphyrin metabolism bae00900   Terpenoid backbone biosynthesis bae00906   Carotenoid biosynthesis bae00907   Pinene, camphor and geraniol degradation bae00910   Nitrogen metabolism bae00920   Sulfur metabolism bae00999   Biosynthesis of various plant secondary metabolites bae01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All 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