KEGG   PATHWAY: bcx03018
Entry
bcx03018                    Pathway                                
Name
RNA degradation - Bacillus cereus 03BB102
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bcx03018  RNA degradation
bcx03018

Other DBs
GO: 0006401
Organism
Bacillus cereus 03BB102 [GN:bcx]
Gene
BCA_5246  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
BCA_3903  pnp; polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
BCA_5240  vacB; ribonuclease R [KO:K12573] [EC:3.1.13.1]
BCA_0284  ATP-dependent RNA helicase, DEAD/DEAH box family [KO:K05592] [EC:5.6.2.7]
BCA_5605  ATP-dependent RNA helicase, DEAD/DEAH box family [KO:K05592] [EC:5.6.2.7]
BCA_2542  ATP-dependent RNA helicase, DEAD/DEAH box family [KO:K05592] [EC:5.6.2.7]
BCA_2898  recQ2; ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
BCA_1544  recQ1; ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
BCA_5481  rho; transcription termination factor Rho [KO:K03628]
BCA_3875  HDIG/HD/KH domain protein [KO:K18682] [EC:3.1.-.-]
BCA_4082  RNA-metabolising metallo-beta-lactamase family protein [KO:K12574] [EC:3.1.-.-]
BCA_3894  ribonuclease J2 [KO:K12574] [EC:3.1.-.-]
BCA_1670  RNA-metabolising metallo-beta-lactamase [KO:K12574] [EC:3.1.-.-]
BCA_4709  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
BCA_4425  dnaK; chaperone protein DnaK [KO:K04043]
BCA_0320  groL; chaperonin GroL [KO:K04077] [EC:5.6.1.7]
BCA_1686  hfq1; host factor-I protein [KO:K03666]
BCA_3803  hfq2; host factor-I protein [KO:K03666]
BCA_A0199  hfq; RNA chaperone Hfq [KO:K03666]
BCA_4101  ppk; polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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