PATHWAY: bic01100 Help Entry bic01100                    Pathway                                 Name Metabolic pathways - Bradyrhizobium icense Class BRITE hierarchy Pathway map bic01100   Metabolic pathways Module bic_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:bic01100] bic_M00002   Glycolysis, core module involving three-carbon compounds [PATH:bic01100] bic_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bic01100] bic_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bic01100] bic_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:bic01100] bic_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bic01100] bic_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bic01100] bic_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:bic01100] bic_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bic01100] bic_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bic01100] bic_M00012   Glyoxylate cycle [PATH:bic01100] bic_M00015   Proline biosynthesis, glutamate => proline [PATH:bic01100] bic_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:bic01100] bic_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:bic01100] bic_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:bic01100] bic_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:bic01100] bic_M00021   Cysteine biosynthesis, serine => cysteine [PATH:bic01100] bic_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:bic01100] bic_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:bic01100] bic_M00026   Histidine biosynthesis, PRPP => histidine [PATH:bic01100] bic_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:bic01100] bic_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:bic01100] bic_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:bic01100] bic_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:bic01100] bic_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:bic01100] bic_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bic01100] bic_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bic01100] bic_M00082   Fatty acid biosynthesis, initiation [PATH:bic01100] bic_M00083   Fatty acid biosynthesis, elongation [PATH:bic01100] bic_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:bic01100] bic_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:bic01100] bic_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:bic01100] bic_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:bic01100] bic_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:bic01100] bic_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:bic01100] bic_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:bic01100] bic_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:bic01100] bic_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:bic01100] bic_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:bic01100] bic_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:bic01100] bic_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:bic01100] bic_M00149   Succinate dehydrogenase, prokaryotes [PATH:bic01100] bic_M00151   Cytochrome bc1 complex respiratory unit [PATH:bic01100] bic_M00155   Cytochrome c oxidase, prokaryotes [PATH:bic01100] bic_M00156   Cytochrome c oxidase, cbb3-type [PATH:bic01100] bic_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:bic01100] bic_M00165   Reductive pentose phosphate cycle (Calvin cycle) [PATH:bic01100] bic_M00168   CAM (Crassulacean acid metabolism), dark [PATH:bic01100] bic_M00169   CAM (Crassulacean acid metabolism), light [PATH:bic01100] bic_M00175   Nitrogen fixation, nitrogen => ammonia [PATH:bic01100] bic_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:bic01100] bic_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bic01100] bic_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:bic01100] bic_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:bic01100] bic_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:bic01100] bic_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:bic01100] bic_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:bic01100] bic_M00595   Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:bic01100] bic_M00621   Glycine cleavage system [PATH:bic01100] bic_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bic01100] bic_M00844   Arginine biosynthesis, ornithine => arginine [PATH:bic01100] bic_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:bic01100] bic_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:bic01100] bic_M00925   Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:bic01100] bic_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:bic01100] bic_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:bic01100] bic_M00970   Proline degradation, proline => glutamate [PATH:bic01100] Organism Bradyrhizobium icense [GN:bic] Related pathway bic00010   Glycolysis / Gluconeogenesis bic00020   Citrate cycle (TCA cycle) bic00030   Pentose phosphate pathway bic00040   Pentose and glucuronate interconversions bic00051   Fructose and mannose metabolism bic00052   Galactose metabolism bic00053   Ascorbate and aldarate metabolism bic00061   Fatty acid biosynthesis bic00071   Fatty acid degradation bic00121   Secondary bile acid biosynthesis bic00130   Ubiquinone and other terpenoid-quinone biosynthesis bic00190   Oxidative phosphorylation bic00220   Arginine biosynthesis bic00230   Purine metabolism bic00240   Pyrimidine metabolism bic00250   Alanine, aspartate and glutamate metabolism bic00260   Glycine, serine and threonine metabolism bic00261   Monobactam biosynthesis bic00270   Cysteine and methionine metabolism bic00280   Valine, leucine and isoleucine degradation bic00290   Valine, leucine and isoleucine biosynthesis bic00300   Lysine biosynthesis bic00310   Lysine degradation bic00330   Arginine and proline metabolism bic00332   Carbapenem biosynthesis bic00340   Histidine metabolism bic00350   Tyrosine metabolism bic00360   Phenylalanine metabolism bic00361   Chlorocyclohexane and chlorobenzene degradation bic00362   Benzoate degradation bic00364   Fluorobenzoate degradation bic00380   Tryptophan metabolism bic00400   Phenylalanine, tyrosine and tryptophan biosynthesis bic00401   Novobiocin biosynthesis bic00405   Phenazine biosynthesis bic00410   beta-Alanine metabolism bic00430   Taurine and hypotaurine metabolism bic00440   Phosphonate and phosphinate metabolism bic00450   Selenocompound metabolism bic00460   Cyanoamino acid metabolism bic00470   D-Amino acid metabolism bic00480   Glutathione metabolism bic00500   Starch and sucrose metabolism bic00514   Other types of O-glycan biosynthesis bic00515   Mannose type O-glycan biosynthesis bic00520   Amino sugar and nucleotide sugar metabolism bic00521   Streptomycin biosynthesis bic00523   Polyketide sugar unit biosynthesis bic00525   Acarbose and validamycin biosynthesis bic00540   Lipopolysaccharide biosynthesis bic00541   O-Antigen nucleotide sugar biosynthesis bic00543   Exopolysaccharide biosynthesis bic00550   Peptidoglycan biosynthesis bic00552   Teichoic acid biosynthesis bic00561   Glycerolipid metabolism bic00562   Inositol phosphate metabolism bic00564   Glycerophospholipid metabolism bic00565   Ether lipid metabolism bic00620   Pyruvate metabolism bic00621   Dioxin degradation bic00622   Xylene degradation bic00623   Toluene degradation bic00624   Polycyclic aromatic hydrocarbon degradation bic00625   Chloroalkane and chloroalkene degradation bic00626   Naphthalene degradation bic00627   Aminobenzoate degradation bic00630   Glyoxylate and dicarboxylate metabolism bic00633   Nitrotoluene degradation bic00640   Propanoate metabolism bic00643   Styrene degradation bic00650   Butanoate metabolism bic00660   C5-Branched dibasic acid metabolism bic00670   One carbon pool by folate bic00680   Methane metabolism bic00710   Carbon fixation by Calvin cycle bic00720   Other carbon fixation pathways bic00730   Thiamine metabolism bic00740   Riboflavin metabolism bic00750   Vitamin B6 metabolism bic00760   Nicotinate and nicotinamide metabolism bic00770   Pantothenate and CoA biosynthesis bic00780   Biotin metabolism bic00785   Lipoic acid metabolism bic00790   Folate biosynthesis bic00791   Atrazine degradation bic00860   Porphyrin metabolism bic00900   Terpenoid backbone biosynthesis bic00903   Limonene degradation bic00906   Carotenoid biosynthesis bic00907   Pinene, camphor and geraniol degradation bic00909   Sesquiterpenoid and triterpenoid biosynthesis bic00910   Nitrogen metabolism bic00920   Sulfur metabolism bic00930   Caprolactam degradation bic00946   Degradation of flavonoids bic00998   Biosynthesis of various antibiotics bic00999   Biosynthesis of various plant secondary metabolites bic01040   Biosynthesis of unsaturated fatty acids bic01059   Biosynthesis of enediyne antibiotics KO pathway ko01100     LinkDB All DBs

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