KEGG   PATHWAY: bpv03018
Entry
bpv03018                    Pathway                                
Name
RNA degradation - Brucella pinnipedialis 6/566
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bpv03018  RNA degradation
bpv03018

Other DBs
GO: 0006401
Organism
Brucella pinnipedialis 6/566 [GN:bpv]
Gene
DK65_1682  rppH; RNA pyrophosphohydrolase [KO:K08311] [EC:3.6.1.-]
DK65_457  ribonuclease, Rne/Rng family domain protein [KO:K08300] [EC:3.1.26.12]
DK65_242  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
DK65_1375  pnp; polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
DK65_326  DEAD/DEAH box helicase family protein [KO:K11927] [EC:5.6.2.7]
DK65_3025  rnr; ribonuclease R [KO:K12573] [EC:3.1.13.1]
DK65_1241  DEAD/DEAH box helicase family protein [KO:K05592] [EC:5.6.2.7]
DK65_1472  rho; transcription termination factor Rho [KO:K03628]
DK65_548  metallo-beta-lactamase superfamily protein [KO:K12574] [EC:3.1.-.-]
DK65_1414  dnaK; chaperone protein DnaK [KO:K04043]
DK65_2278  groL; chaperonin GroL [KO:K04077] [EC:5.6.1.7]
DK65_261  hfq; RNA chaperone Hfq [KO:K03666]
DK65_614  ppk1; polyphosphate kinase 1 [KO:K00937] [EC:2.7.4.1]
DK65_1045  ppk2; polyphosphate kinase 2 [KO:K22468] [EC:2.7.4.34]
DK65_1936  poly A polymerase head domain protein [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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