KEGG   PATHWAY: caf01100
Entry
caf01100                    Pathway                                
Name
Metabolic pathways - Citrobacter amalonaticus FDAARGOS_165
Class
Pathway map
caf01100  Metabolic pathways
caf01100

Module
caf_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:caf01100]
caf_M00002  Glycolysis, core module involving three-carbon compounds [PATH:caf01100]
caf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:caf01100]
caf_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:caf01100]
caf_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:caf01100]
caf_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:caf01100]
caf_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:caf01100]
caf_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:caf01100]
caf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:caf01100]
caf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:caf01100]
caf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:caf01100]
caf_M00012  Glyoxylate cycle [PATH:caf01100]
caf_M00015  Proline biosynthesis, glutamate => proline [PATH:caf01100]
caf_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:caf01100]
caf_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:caf01100]
caf_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:caf01100]
caf_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:caf01100]
caf_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:caf01100]
caf_M00021  Cysteine biosynthesis, serine => cysteine [PATH:caf01100]
caf_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:caf01100]
caf_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:caf01100]
caf_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:caf01100]
caf_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:caf01100]
caf_M00026  Histidine biosynthesis, PRPP => histidine [PATH:caf01100]
caf_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:caf01100]
caf_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:caf01100]
caf_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:caf01100]
caf_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:caf01100]
caf_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:caf01100]
caf_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:caf01100]
caf_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:caf01100]
caf_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:caf01100]
caf_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:caf01100]
caf_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:caf01100]
caf_M00063  CMP-KDO biosynthesis [PATH:caf01100]
caf_M00064  ADP-L-glycero-D-manno-heptose biosynthesis [PATH:caf01100]
caf_M00082  Fatty acid biosynthesis, initiation [PATH:caf01100]
caf_M00083  Fatty acid biosynthesis, elongation [PATH:caf01100]
caf_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:caf01100]
caf_M00087  beta-Oxidation [PATH:caf01100]
caf_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:caf01100]
caf_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:caf01100]
caf_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:caf01100]
caf_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:caf01100]
caf_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:caf01100]
caf_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:caf01100]
caf_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:caf01100]
caf_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:caf01100]
caf_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:caf01100]
caf_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:caf01100]
caf_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:caf01100]
caf_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:caf01100]
caf_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:caf01100]
caf_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:caf01100]
caf_M00127  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:caf01100]
caf_M00133  Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:caf01100]
caf_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:caf01100]
caf_M00149  Succinate dehydrogenase, prokaryotes [PATH:caf01100]
caf_M00150  Fumarate reductase, prokaryotes [PATH:caf01100]
caf_M00151  Cytochrome bc1 complex respiratory unit [PATH:caf01100]
caf_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:caf01100]
caf_M00168  CAM (Crassulacean acid metabolism), dark [PATH:caf01100]
caf_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:caf01100]
caf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:caf01100]
caf_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:caf01100]
caf_M00417  Cytochrome o ubiquinol oxidase [PATH:caf01100]
caf_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:caf01100]
caf_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:caf01100]
caf_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:caf01100]
caf_M00551  Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:caf01100]
caf_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:caf01100]
caf_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:caf01100]
caf_M00555  Betaine biosynthesis, choline => betaine [PATH:caf01100]
caf_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:caf01100]
caf_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:caf01100]
caf_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:caf01100]
caf_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:caf01100]
caf_M00621  Glycine cleavage system [PATH:caf01100]
caf_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:caf01100]
caf_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:caf01100]
caf_M00761  Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:caf01100]
caf_M00844  Arginine biosynthesis, ornithine => arginine [PATH:caf01100]
caf_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:caf01100]
caf_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:caf01100]
caf_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:caf01100]
caf_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:caf01100]
caf_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:caf01100]
caf_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:caf01100]
caf_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:caf01100]
caf_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:caf01100]
caf_M00924  Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:caf01100]
caf_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:caf01100]
caf_M00956  Lysine degradation, bacteria, L-lysine => succinate [PATH:caf01100]
caf_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:caf01100]
caf_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:caf01100]
caf_M00970  Proline degradation, proline => glutamate [PATH:caf01100]
Organism
Citrobacter amalonaticus FDAARGOS_165 [GN:caf]
Related
pathway
caf00010  Glycolysis / Gluconeogenesis
caf00020  Citrate cycle (TCA cycle)
caf00030  Pentose phosphate pathway
caf00040  Pentose and glucuronate interconversions
caf00051  Fructose and mannose metabolism
caf00052  Galactose metabolism
caf00053  Ascorbate and aldarate metabolism
caf00061  Fatty acid biosynthesis
caf00071  Fatty acid degradation
caf00130  Ubiquinone and other terpenoid-quinone biosynthesis
caf00190  Oxidative phosphorylation
caf00220  Arginine biosynthesis
caf00230  Purine metabolism
caf00240  Pyrimidine metabolism
caf00250  Alanine, aspartate and glutamate metabolism
caf00260  Glycine, serine and threonine metabolism
caf00261  Monobactam biosynthesis
caf00270  Cysteine and methionine metabolism
caf00280  Valine, leucine and isoleucine degradation
caf00290  Valine, leucine and isoleucine biosynthesis
caf00300  Lysine biosynthesis
caf00310  Lysine degradation
caf00330  Arginine and proline metabolism
caf00332  Carbapenem biosynthesis
caf00340  Histidine metabolism
caf00350  Tyrosine metabolism
caf00360  Phenylalanine metabolism
caf00361  Chlorocyclohexane and chlorobenzene degradation
caf00362  Benzoate degradation
caf00364  Fluorobenzoate degradation
caf00380  Tryptophan metabolism
caf00400  Phenylalanine, tyrosine and tryptophan biosynthesis
caf00401  Novobiocin biosynthesis
caf00410  beta-Alanine metabolism
caf00430  Taurine and hypotaurine metabolism
caf00440  Phosphonate and phosphinate metabolism
caf00450  Selenocompound metabolism
caf00460  Cyanoamino acid metabolism
caf00470  D-Amino acid metabolism
caf00480  Glutathione metabolism
caf00500  Starch and sucrose metabolism
caf00511  Other glycan degradation
caf00520  Amino sugar and nucleotide sugar metabolism
caf00521  Streptomycin biosynthesis
caf00523  Polyketide sugar unit biosynthesis
caf00525  Acarbose and validamycin biosynthesis
caf00540  Lipopolysaccharide biosynthesis
caf00541  O-Antigen nucleotide sugar biosynthesis
caf00542  O-Antigen repeat unit biosynthesis
caf00543  Exopolysaccharide biosynthesis
caf00550  Peptidoglycan biosynthesis
caf00552  Teichoic acid biosynthesis
caf00561  Glycerolipid metabolism
caf00562  Inositol phosphate metabolism
caf00564  Glycerophospholipid metabolism
caf00565  Ether lipid metabolism
caf00592  alpha-Linolenic acid metabolism
caf00620  Pyruvate metabolism
caf00622  Xylene degradation
caf00623  Toluene degradation
caf00625  Chloroalkane and chloroalkene degradation
caf00626  Naphthalene degradation
caf00627  Aminobenzoate degradation
caf00630  Glyoxylate and dicarboxylate metabolism
caf00633  Nitrotoluene degradation
caf00640  Propanoate metabolism
caf00650  Butanoate metabolism
caf00660  C5-Branched dibasic acid metabolism
caf00670  One carbon pool by folate
caf00680  Methane metabolism
caf00710  Carbon fixation by Calvin cycle
caf00720  Other carbon fixation pathways
caf00730  Thiamine metabolism
caf00740  Riboflavin metabolism
caf00750  Vitamin B6 metabolism
caf00760  Nicotinate and nicotinamide metabolism
caf00770  Pantothenate and CoA biosynthesis
caf00780  Biotin metabolism
caf00785  Lipoic acid metabolism
caf00790  Folate biosynthesis
caf00860  Porphyrin metabolism
caf00900  Terpenoid backbone biosynthesis
caf00903  Limonene degradation
caf00907  Pinene, camphor and geraniol degradation
caf00910  Nitrogen metabolism
caf00920  Sulfur metabolism
caf00930  Caprolactam degradation
caf00946  Degradation of flavonoids
caf00999  Biosynthesis of various plant secondary metabolites
caf01040  Biosynthesis of unsaturated fatty acids
caf01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
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