PATHWAY: cap01100 Help Entry cap01100                    Pathway                                 Name Metabolic pathways - Caldilinea aerophila Class BRITE hierarchy Pathway map cap01100   Metabolic pathways Module cap_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:cap01100] cap_M00002   Glycolysis, core module involving three-carbon compounds [PATH:cap01100] cap_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cap01100] cap_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cap01100] cap_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:cap01100] cap_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cap01100] cap_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cap01100] cap_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:cap01100] cap_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cap01100] cap_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cap01100] cap_M00012   Glyoxylate cycle [PATH:cap01100] cap_M00015   Proline biosynthesis, glutamate => proline [PATH:cap01100] cap_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:cap01100] cap_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:cap01100] cap_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:cap01100] cap_M00021   Cysteine biosynthesis, serine => cysteine [PATH:cap01100] cap_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:cap01100] cap_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:cap01100] cap_M00026   Histidine biosynthesis, PRPP => histidine [PATH:cap01100] cap_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:cap01100] cap_M00031   Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine [PATH:cap01100] cap_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:cap01100] cap_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:cap01100] cap_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:cap01100] cap_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:cap01100] cap_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cap01100] cap_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cap01100] cap_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:cap01100] cap_M00087   beta-Oxidation [PATH:cap01100] cap_M00098   Acylglycerol degradation [PATH:cap01100] cap_M00140   C1-unit interconversion, prokaryotes [PATH:cap01100] cap_M00155   Cytochrome c oxidase, prokaryotes [PATH:cap01100] cap_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:cap01100] cap_M00168   CAM (Crassulacean acid metabolism), dark [PATH:cap01100] cap_M00169   CAM (Crassulacean acid metabolism), light [PATH:cap01100] cap_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cap01100] cap_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:cap01100] cap_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:cap01100] cap_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:cap01100] cap_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:cap01100] cap_M00569   Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA [PATH:cap01100] cap_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:cap01100] cap_M00621   Glycine cleavage system [PATH:cap01100] cap_M00793   dTDP-L-rhamnose biosynthesis [PATH:cap01100] cap_M00844   Arginine biosynthesis, ornithine => arginine [PATH:cap01100] cap_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:cap01100] cap_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:cap01100] cap_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:cap01100] cap_M00970   Proline degradation, proline => glutamate [PATH:cap01100] Organism Caldilinea aerophila [GN:cap] Related pathway cap00010   Glycolysis / Gluconeogenesis cap00020   Citrate cycle (TCA cycle) cap00030   Pentose phosphate pathway cap00040   Pentose and glucuronate interconversions cap00051   Fructose and mannose metabolism cap00052   Galactose metabolism cap00053   Ascorbate and aldarate metabolism cap00061   Fatty acid biosynthesis cap00071   Fatty acid degradation cap00074   Mycolic acid biosynthesis cap00130   Ubiquinone and other terpenoid-quinone biosynthesis cap00190   Oxidative phosphorylation cap00220   Arginine biosynthesis cap00230   Purine metabolism cap00240   Pyrimidine metabolism cap00250   Alanine, aspartate and glutamate metabolism cap00260   Glycine, serine and threonine metabolism cap00261   Monobactam biosynthesis cap00270   Cysteine and methionine metabolism cap00280   Valine, leucine and isoleucine degradation cap00290   Valine, leucine and isoleucine biosynthesis cap00300   Lysine biosynthesis cap00310   Lysine degradation cap00311   Penicillin and cephalosporin biosynthesis cap00330   Arginine and proline metabolism cap00332   Carbapenem biosynthesis cap00340   Histidine metabolism cap00350   Tyrosine metabolism cap00360   Phenylalanine metabolism cap00361   Chlorocyclohexane and chlorobenzene degradation cap00362   Benzoate degradation cap00364   Fluorobenzoate degradation cap00380   Tryptophan metabolism cap00400   Phenylalanine, tyrosine and tryptophan biosynthesis cap00401   Novobiocin biosynthesis cap00405   Phenazine biosynthesis cap00410   beta-Alanine metabolism cap00430   Taurine and hypotaurine metabolism cap00440   Phosphonate and phosphinate metabolism cap00450   Selenocompound metabolism cap00460   Cyanoamino acid metabolism cap00470   D-Amino acid metabolism cap00480   Glutathione metabolism cap00500   Starch and sucrose metabolism cap00511   Other glycan degradation cap00520   Amino sugar and nucleotide sugar metabolism cap00521   Streptomycin biosynthesis cap00523   Polyketide sugar unit biosynthesis cap00525   Acarbose and validamycin biosynthesis cap00540   Lipopolysaccharide biosynthesis cap00541   O-Antigen nucleotide sugar biosynthesis cap00542   O-Antigen repeat unit biosynthesis cap00543   Exopolysaccharide biosynthesis cap00550   Peptidoglycan biosynthesis cap00552   Teichoic acid biosynthesis cap00561   Glycerolipid metabolism cap00562   Inositol phosphate metabolism cap00564   Glycerophospholipid metabolism cap00572   Arabinogalactan biosynthesis - Mycobacterium cap00592   alpha-Linolenic acid metabolism cap00600   Sphingolipid metabolism cap00620   Pyruvate metabolism cap00621   Dioxin degradation cap00622   Xylene degradation cap00623   Toluene degradation cap00625   Chloroalkane and chloroalkene degradation cap00626   Naphthalene degradation cap00627   Aminobenzoate degradation cap00630   Glyoxylate and dicarboxylate metabolism cap00640   Propanoate metabolism cap00643   Styrene degradation cap00650   Butanoate metabolism cap00660   C5-Branched dibasic acid metabolism cap00670   One carbon pool by folate cap00680   Methane metabolism cap00710   Carbon fixation by Calvin cycle cap00720   Other carbon fixation pathways cap00730   Thiamine metabolism cap00740   Riboflavin metabolism cap00750   Vitamin B6 metabolism cap00760   Nicotinate and nicotinamide metabolism cap00770   Pantothenate and CoA biosynthesis cap00780   Biotin metabolism cap00785   Lipoic acid metabolism cap00790   Folate biosynthesis cap00860   Porphyrin metabolism cap00900   Terpenoid backbone biosynthesis cap00903   Limonene degradation cap00906   Carotenoid biosynthesis cap00907   Pinene, camphor and geraniol degradation cap00910   Nitrogen metabolism cap00920   Sulfur metabolism cap00930   Caprolactam degradation cap00946   Degradation of flavonoids cap00999   Biosynthesis of various plant secondary metabolites cap01057   Biosynthesis of type II polyketide products KO pathway ko01100     LinkDB All DBs

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