KEGG   PATHWAY: clg03030
Entry
clg03030                    Pathway                                
Name
DNA replication - Caldisphaera lagunensis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
clg03030  DNA replication
clg03030

Organism
Caldisphaera lagunensis [GN:clg]
Gene
Calag_0753  DNA primase [KO:K02316] [EC:2.7.7.101]
Calag_0036  ribonuclease H, mammalian HI/archaeal HII subfamily [KO:K03470] [EC:3.1.26.4]
Calag_0752  DNA polymerase pol2 [KO:K02319] [EC:2.7.7.7]
Calag_1108  DNA polymerase elongation subunit (family B) [KO:K02319] [EC:2.7.7.7]
Calag_1093  DNA polymerase elongation subunit (family B) [KO:K02319] [EC:2.7.7.7]
Calag_0664  putative ATPase involved in replication control, Cdc46/Mcm family [KO:K10726] [EC:5.6.2.3]
Calag_0395  eukaryotic-type DNA primase, catalytic (small) subunit [KO:K02683] [EC:2.7.7.102]
Calag_0489  DNA primase, large subunit [KO:K18882]
Calag_1393  DNA polymerase sliding clamp subunit [KO:K04802]
Calag_0208  DNA polymerase sliding clamp subunit [KO:K04802]
Calag_0394  proliferating cell nuclear antigen PCNA [KO:K04802]
Calag_0647  DNA polymerase III, gamma/tau subunit [KO:K04801]
Calag_0648  AAA ATPase [KO:K04800]
Calag_1412  flap structure-specific endonuclease [KO:K04799] [EC:3.1.-.-]
Calag_1450  ATP-dependent DNA ligase [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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