KEGG   PATHWAY: cvr03050
Entry
cvr03050                    Pathway                                
Name
Proteasome - Chlorella variabilis
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cvr03050  Proteasome
cvr03050

Other DBs
GO: 0000502
Organism
Chlorella variabilis [GN:cvr]
Gene
CHLNCDRAFT_20545  hypothetical protein [KO:K03033]
CHLNCDRAFT_139941  hypothetical protein [KO:K06693]
CHLNCDRAFT_56118  hypothetical protein [KO:K03035]
CHLNCDRAFT_56351  hypothetical protein [KO:K03036]
CHLNCDRAFT_55933  hypothetical protein [KO:K03037]
CHLNCDRAFT_10776  hypothetical protein [KO:K03038]
CHLNCDRAFT_21334  hypothetical protein [KO:K03039]
CHLNCDRAFT_56234  hypothetical protein [KO:K03030]
CHLNCDRAFT_142990  hypothetical protein [KO:K03031]
CHLNCDRAFT_136604  hypothetical protein [KO:K10881]
CHLNCDRAFT_54537  hypothetical protein [KO:K03029]
CHLNCDRAFT_25435  hypothetical protein [KO:K03028]
CHLNCDRAFT_48732  hypothetical protein [KO:K03032]
CHLNCDRAFT_141354  hypothetical protein [KO:K06691]
CHLNCDRAFT_56025  26S protease regulatory subunit 7 [KO:K03061]
CHLNCDRAFT_56157  26S proteasome AAA-ATPase subunit RPT2a [KO:K03062]
CHLNCDRAFT_135304  26S proteasome AAA-ATPase subunit RPT6a [KO:K03066]
CHLNCDRAFT_56078  hypothetical protein [KO:K03064]
CHLNCDRAFT_134194  hypothetical protein [KO:K03065]
CHLNCDRAFT_30648  hypothetical protein [KO:K03063]
CHLNCDRAFT_27583  hypothetical protein [KO:K02730] [EC:3.4.25.1]
CHLNCDRAFT_48764  hypothetical protein [KO:K02726] [EC:3.4.25.1]
CHLNCDRAFT_24644  hypothetical protein [KO:K02728] [EC:3.4.25.1]
CHLNCDRAFT_24020  hypothetical protein [KO:K02731] [EC:3.4.25.1]
CHLNCDRAFT_26444  hypothetical protein [KO:K02729] [EC:3.4.25.1]
CHLNCDRAFT_56088  hypothetical protein [KO:K02727] [EC:3.4.25.1]
CHLNCDRAFT_31571  hypothetical protein [KO:K02738] [EC:3.4.25.1]
CHLNCDRAFT_56068  hypothetical protein [KO:K02738] [EC:3.4.25.1]
CHLNCDRAFT_30565  hypothetical protein [KO:K02739] [EC:3.4.25.1]
CHLNCDRAFT_48590  hypothetical protein [KO:K02735] [EC:3.4.25.1]
CHLNCDRAFT_135748  hypothetical protein [KO:K02734] [EC:3.4.25.1]
CHLNCDRAFT_56983  hypothetical protein [KO:K02737] [EC:3.4.25.1]
CHLNCDRAFT_22624  hypothetical protein [KO:K02732] [EC:3.4.25.1]
CHLNCDRAFT_25653  hypothetical protein [KO:K02736] [EC:3.4.25.1]
CHLNCDRAFT_136975  hypothetical protein [KO:K06700]
CHLNCDRAFT_142429  hypothetical protein [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
cvr04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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