PATHWAY: cyo01100 Help Entry cyo01100                    Pathway                                 Name Metabolic pathways - Citrobacter youngae Class BRITE hierarchy Pathway map cyo01100   Metabolic pathways Module cyo_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:cyo01100] cyo_M00002   Glycolysis, core module involving three-carbon compounds [PATH:cyo01100] cyo_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cyo01100] cyo_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cyo01100] cyo_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:cyo01100] cyo_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cyo01100] cyo_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cyo01100] cyo_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:cyo01100] cyo_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:cyo01100] cyo_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cyo01100] cyo_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cyo01100] cyo_M00012   Glyoxylate cycle [PATH:cyo01100] cyo_M00015   Proline biosynthesis, glutamate => proline [PATH:cyo01100] cyo_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:cyo01100] cyo_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:cyo01100] cyo_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:cyo01100] cyo_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:cyo01100] cyo_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:cyo01100] cyo_M00021   Cysteine biosynthesis, serine => cysteine [PATH:cyo01100] cyo_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:cyo01100] cyo_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:cyo01100] cyo_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:cyo01100] cyo_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:cyo01100] cyo_M00026   Histidine biosynthesis, PRPP => histidine [PATH:cyo01100] cyo_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:cyo01100] cyo_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:cyo01100] cyo_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:cyo01100] cyo_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:cyo01100] cyo_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:cyo01100] cyo_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:cyo01100] cyo_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cyo01100] cyo_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cyo01100] cyo_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:cyo01100] cyo_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:cyo01100] cyo_M00063   CMP-KDO biosynthesis [PATH:cyo01100] cyo_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:cyo01100] cyo_M00082   Fatty acid biosynthesis, initiation [PATH:cyo01100] cyo_M00083   Fatty acid biosynthesis, elongation [PATH:cyo01100] cyo_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:cyo01100] cyo_M00087   beta-Oxidation [PATH:cyo01100] cyo_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:cyo01100] cyo_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:cyo01100] cyo_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:cyo01100] cyo_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:cyo01100] cyo_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:cyo01100] cyo_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:cyo01100] cyo_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:cyo01100] cyo_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:cyo01100] cyo_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:cyo01100] cyo_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:cyo01100] cyo_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:cyo01100] cyo_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:cyo01100] cyo_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:cyo01100] cyo_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:cyo01100] cyo_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:cyo01100] cyo_M00136   GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:cyo01100] cyo_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:cyo01100] cyo_M00149   Succinate dehydrogenase, prokaryotes [PATH:cyo01100] cyo_M00150   Fumarate reductase, prokaryotes [PATH:cyo01100] cyo_M00151   Cytochrome bc1 complex respiratory unit [PATH:cyo01100] cyo_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:cyo01100] cyo_M00168   CAM (Crassulacean acid metabolism), dark [PATH:cyo01100] cyo_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:cyo01100] cyo_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cyo01100] cyo_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:cyo01100] cyo_M00417   Cytochrome o ubiquinol oxidase [PATH:cyo01100] cyo_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:cyo01100] cyo_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:cyo01100] cyo_M00545   Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA [PATH:cyo01100] cyo_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:cyo01100] cyo_M00550   Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:cyo01100] cyo_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:cyo01100] cyo_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:cyo01100] cyo_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:cyo01100] cyo_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:cyo01100] cyo_M00621   Glycine cleavage system [PATH:cyo01100] cyo_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:cyo01100] cyo_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:cyo01100] cyo_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:cyo01100] cyo_M00844   Arginine biosynthesis, ornithine => arginine [PATH:cyo01100] cyo_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:cyo01100] cyo_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:cyo01100] cyo_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:cyo01100] cyo_M00878   Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA [PATH:cyo01100] cyo_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:cyo01100] cyo_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:cyo01100] cyo_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:cyo01100] cyo_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:cyo01100] cyo_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:cyo01100] cyo_M00924   Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:cyo01100] cyo_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cyo01100] cyo_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:cyo01100] cyo_M00956   Lysine degradation, bacteria, L-lysine => succinate [PATH:cyo01100] cyo_M00970   Proline degradation, proline => glutamate [PATH:cyo01100] Organism Citrobacter youngae [GN:cyo] Related pathway cyo00010   Glycolysis / Gluconeogenesis cyo00020   Citrate cycle (TCA cycle) cyo00030   Pentose phosphate pathway cyo00040   Pentose and glucuronate interconversions cyo00051   Fructose and mannose metabolism cyo00052   Galactose metabolism cyo00053   Ascorbate and aldarate metabolism cyo00061   Fatty acid biosynthesis cyo00071   Fatty acid degradation cyo00130   Ubiquinone and other terpenoid-quinone biosynthesis cyo00190   Oxidative phosphorylation cyo00220   Arginine biosynthesis cyo00230   Purine metabolism cyo00240   Pyrimidine metabolism cyo00250   Alanine, aspartate and glutamate metabolism cyo00260   Glycine, serine and threonine metabolism cyo00261   Monobactam biosynthesis cyo00270   Cysteine and methionine metabolism cyo00280   Valine, leucine and isoleucine degradation cyo00290   Valine, leucine and isoleucine biosynthesis cyo00300   Lysine biosynthesis cyo00310   Lysine degradation cyo00330   Arginine and proline metabolism cyo00332   Carbapenem biosynthesis cyo00340   Histidine metabolism cyo00350   Tyrosine metabolism cyo00360   Phenylalanine metabolism cyo00361   Chlorocyclohexane and chlorobenzene degradation cyo00362   Benzoate degradation cyo00364   Fluorobenzoate degradation cyo00380   Tryptophan metabolism cyo00400   Phenylalanine, tyrosine and tryptophan biosynthesis cyo00401   Novobiocin biosynthesis cyo00410   beta-Alanine metabolism cyo00430   Taurine and hypotaurine metabolism cyo00440   Phosphonate and phosphinate metabolism cyo00450   Selenocompound metabolism cyo00460   Cyanoamino acid metabolism cyo00470   D-Amino acid metabolism cyo00480   Glutathione metabolism cyo00500   Starch and sucrose metabolism cyo00511   Other glycan degradation cyo00520   Amino sugar and nucleotide sugar metabolism cyo00521   Streptomycin biosynthesis cyo00523   Polyketide sugar unit biosynthesis cyo00525   Acarbose and validamycin biosynthesis cyo00540   Lipopolysaccharide biosynthesis cyo00541   O-Antigen nucleotide sugar biosynthesis cyo00542   O-Antigen repeat unit biosynthesis cyo00543   Exopolysaccharide biosynthesis cyo00550   Peptidoglycan biosynthesis cyo00552   Teichoic acid biosynthesis cyo00561   Glycerolipid metabolism cyo00562   Inositol phosphate metabolism cyo00564   Glycerophospholipid metabolism cyo00565   Ether lipid metabolism cyo00592   alpha-Linolenic acid metabolism cyo00600   Sphingolipid metabolism cyo00620   Pyruvate metabolism cyo00621   Dioxin degradation cyo00622   Xylene degradation cyo00623   Toluene degradation cyo00625   Chloroalkane and chloroalkene degradation cyo00626   Naphthalene degradation cyo00627   Aminobenzoate degradation cyo00630   Glyoxylate and dicarboxylate metabolism cyo00633   Nitrotoluene degradation cyo00640   Propanoate metabolism cyo00650   Butanoate metabolism cyo00660   C5-Branched dibasic acid metabolism cyo00670   One carbon pool by folate cyo00680   Methane metabolism cyo00730   Thiamine metabolism cyo00740   Riboflavin metabolism cyo00750   Vitamin B6 metabolism cyo00760   Nicotinate and nicotinamide metabolism cyo00770   Pantothenate and CoA biosynthesis cyo00780   Biotin metabolism cyo00785   Lipoic acid metabolism cyo00790   Folate biosynthesis cyo00791   Atrazine degradation cyo00860   Porphyrin metabolism cyo00900   Terpenoid backbone biosynthesis cyo00907   Pinene, camphor and geraniol degradation cyo00910   Nitrogen metabolism cyo00920   Sulfur metabolism cyo00930   Caprolactam degradation cyo00946   Degradation of flavonoids cyo00999   Biosynthesis of various plant secondary metabolites cyo01040   Biosynthesis of unsaturated fatty acids cyo01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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