KEGG   PATHWAY: edj03018
Entry
edj03018                    Pathway                                
Name
RNA degradation - Escherichia coli DH1
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
edj03018  RNA degradation
edj03018

Other DBs
GO: 0006401
Organism
Escherichia coli DH1 [GN:edj]
Gene
ECDH1ME8569_2737  nudH; RNA pyrophosphohydrolase [KO:K08311] [EC:3.6.1.-]
ECDH1ME8569_1019  rne; ribonuclease E [KO:K08300] [EC:3.1.26.12]
ECDH1ME8569_3661  rhlB; ATP-dependent RNA helicase rhlB [KO:K03732] [EC:5.6.2.7]
ECDH1ME8569_2689  eno; enolase [KO:K01689] [EC:4.2.1.11]
ECDH1ME8569_3055  pnp; polynucleotide phosphorylase/polyadenylase [KO:K00962] [EC:2.7.7.8]
ECDH1ME8569_0750  rhlE; ATP-dependent RNA helicase RhlE [KO:K11927] [EC:5.6.2.7]
ECDH1ME8569_4036  rnr; exoribonuclease R [KO:K12573] [EC:3.1.13.1]
ECDH1ME8569_3053  deaD; ATP-dependent RNA helicase DeaD [KO:K05592] [EC:5.6.2.7]
ECDH1ME8569_3701  recQ; ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
ECDH1ME8569_3664  rho; transcription termination factor rho [KO:K03628]
ECDH1ME8569_3785  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
ECDH1ME8569_0013  dnaK; chaperone protein dnaK [KO:K04043]
ECDH1ME8569_4001  groL; 60 kDa chaperonin 1 [KO:K04077] [EC:5.6.1.7]
ECDH1ME8569_4029  hfq; RNA-binding protein Hfq [KO:K03666]
ECDH1ME8569_2427  ppk; polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
ECDH1ME8569_0137  pcnB; poly(A) polymerase I [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
LinkDB

DBGET integrated database retrieval system