PATHWAY: ema01100 Help Entry ema01100                    Pathway                                 Name Metabolic pathways - Escherichia marmotae Class BRITE hierarchy Pathway map ema01100   Metabolic pathways Module ema_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ema01100] ema_M00002   Glycolysis, core module involving three-carbon compounds [PATH:ema01100] ema_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ema01100] ema_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ema01100] ema_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:ema01100] ema_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ema01100] ema_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ema01100] ema_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ema01100] ema_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:ema01100] ema_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ema01100] ema_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ema01100] ema_M00012   Glyoxylate cycle [PATH:ema01100] ema_M00015   Proline biosynthesis, glutamate => proline [PATH:ema01100] ema_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:ema01100] ema_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:ema01100] ema_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:ema01100] ema_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:ema01100] ema_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:ema01100] ema_M00021   Cysteine biosynthesis, serine => cysteine [PATH:ema01100] ema_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:ema01100] ema_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:ema01100] ema_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:ema01100] ema_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:ema01100] ema_M00026   Histidine biosynthesis, PRPP => histidine [PATH:ema01100] ema_M00027   GABA (gamma-Aminobutyrate) shunt [PATH:ema01100] ema_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:ema01100] ema_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:ema01100] ema_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:ema01100] ema_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:ema01100] ema_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:ema01100] ema_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:ema01100] ema_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ema01100] ema_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ema01100] ema_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:ema01100] ema_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ema01100] ema_M00063   CMP-KDO biosynthesis [PATH:ema01100] ema_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:ema01100] ema_M00082   Fatty acid biosynthesis, initiation [PATH:ema01100] ema_M00083   Fatty acid biosynthesis, elongation [PATH:ema01100] ema_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:ema01100] ema_M00087   beta-Oxidation [PATH:ema01100] ema_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:ema01100] ema_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:ema01100] ema_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:ema01100] ema_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:ema01100] ema_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:ema01100] ema_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:ema01100] ema_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:ema01100] ema_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:ema01100] ema_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:ema01100] ema_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:ema01100] ema_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:ema01100] ema_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:ema01100] ema_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:ema01100] ema_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:ema01100] ema_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:ema01100] ema_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:ema01100] ema_M00149   Succinate dehydrogenase, prokaryotes [PATH:ema01100] ema_M00150   Fumarate reductase, prokaryotes [PATH:ema01100] ema_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:ema01100] ema_M00168   CAM (Crassulacean acid metabolism), dark [PATH:ema01100] ema_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:ema01100] ema_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ema01100] ema_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:ema01100] ema_M00417   Cytochrome o ubiquinol oxidase [PATH:ema01100] ema_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:ema01100] ema_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:ema01100] ema_M00545   Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA [PATH:ema01100] ema_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:ema01100] ema_M00550   Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:ema01100] ema_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:ema01100] ema_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:ema01100] ema_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:ema01100] ema_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:ema01100] ema_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:ema01100] ema_M00621   Glycine cleavage system [PATH:ema01100] ema_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ema01100] ema_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:ema01100] ema_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:ema01100] ema_M00844   Arginine biosynthesis, ornithine => arginine [PATH:ema01100] ema_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:ema01100] ema_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:ema01100] ema_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:ema01100] ema_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:ema01100] ema_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:ema01100] ema_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:ema01100] ema_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:ema01100] ema_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:ema01100] ema_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:ema01100] ema_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:ema01100] ema_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:ema01100] ema_M00970   Proline degradation, proline => glutamate [PATH:ema01100] Organism Escherichia marmotae [GN:ema] Related pathway ema00010   Glycolysis / Gluconeogenesis ema00020   Citrate cycle (TCA cycle) ema00030   Pentose phosphate pathway ema00040   Pentose and glucuronate interconversions ema00051   Fructose and mannose metabolism ema00052   Galactose metabolism ema00053   Ascorbate and aldarate metabolism ema00061   Fatty acid biosynthesis ema00071   Fatty acid degradation ema00121   Secondary bile acid biosynthesis ema00130   Ubiquinone and other terpenoid-quinone biosynthesis ema00190   Oxidative phosphorylation ema00220   Arginine biosynthesis ema00230   Purine metabolism ema00240   Pyrimidine metabolism ema00250   Alanine, aspartate and glutamate metabolism ema00260   Glycine, serine and threonine metabolism ema00261   Monobactam biosynthesis ema00270   Cysteine and methionine metabolism ema00280   Valine, leucine and isoleucine degradation ema00290   Valine, leucine and isoleucine biosynthesis ema00300   Lysine biosynthesis ema00310   Lysine degradation ema00330   Arginine and proline metabolism ema00332   Carbapenem biosynthesis ema00340   Histidine metabolism ema00350   Tyrosine metabolism ema00360   Phenylalanine metabolism ema00361   Chlorocyclohexane and chlorobenzene degradation ema00362   Benzoate degradation ema00364   Fluorobenzoate degradation ema00380   Tryptophan metabolism ema00400   Phenylalanine, tyrosine and tryptophan biosynthesis ema00401   Novobiocin biosynthesis ema00410   beta-Alanine metabolism ema00430   Taurine and hypotaurine metabolism ema00450   Selenocompound metabolism ema00460   Cyanoamino acid metabolism ema00470   D-Amino acid metabolism ema00480   Glutathione metabolism ema00500   Starch and sucrose metabolism ema00511   Other glycan degradation ema00520   Amino sugar and nucleotide sugar metabolism ema00521   Streptomycin biosynthesis ema00523   Polyketide sugar unit biosynthesis ema00525   Acarbose and validamycin biosynthesis ema00540   Lipopolysaccharide biosynthesis ema00541   O-Antigen nucleotide sugar biosynthesis ema00542   O-Antigen repeat unit biosynthesis ema00543   Exopolysaccharide biosynthesis ema00550   Peptidoglycan biosynthesis ema00552   Teichoic acid biosynthesis ema00561   Glycerolipid metabolism ema00562   Inositol phosphate metabolism ema00564   Glycerophospholipid metabolism ema00565   Ether lipid metabolism ema00591   Linoleic acid metabolism ema00592   alpha-Linolenic acid metabolism ema00600   Sphingolipid metabolism ema00620   Pyruvate metabolism ema00621   Dioxin degradation ema00622   Xylene degradation ema00623   Toluene degradation ema00625   Chloroalkane and chloroalkene degradation ema00626   Naphthalene degradation ema00627   Aminobenzoate degradation ema00630   Glyoxylate and dicarboxylate metabolism ema00633   Nitrotoluene degradation ema00640   Propanoate metabolism ema00650   Butanoate metabolism ema00660   C5-Branched dibasic acid metabolism ema00670   One carbon pool by folate ema00680   Methane metabolism ema00710   Carbon fixation by Calvin cycle ema00720   Other carbon fixation pathways ema00730   Thiamine metabolism ema00740   Riboflavin metabolism ema00750   Vitamin B6 metabolism ema00760   Nicotinate and nicotinamide metabolism ema00770   Pantothenate and CoA biosynthesis ema00780   Biotin metabolism ema00785   Lipoic acid metabolism ema00790   Folate biosynthesis ema00860   Porphyrin metabolism ema00900   Terpenoid backbone biosynthesis ema00907   Pinene, camphor and geraniol degradation ema00910   Nitrogen metabolism ema00920   Sulfur metabolism ema00930   Caprolactam degradation ema00946   Degradation of flavonoids ema00999   Biosynthesis of various plant secondary metabolites ema01040   Biosynthesis of unsaturated fatty acids ema01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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