KEGG   PATHWAY: epz04136
Entry
epz04136                    Pathway                                
Name
Autophagy - other - Equus przewalskii (Przewalski's horse)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
epz04136  Autophagy - other
epz04136

Other DBs
GO: 0006914
Organism
Equus przewalskii (Przewalski's horse) [GN:epz]
Gene
103547320  RPTOR; regulatory associated protein of MTOR complex 1 [KO:K07204]
103552237  MTOR; mechanistic target of rapamycin [KO:K07203] [EC:2.7.11.1]
103566167  MLST8; MTOR associated protein, LST8 homolog [KO:K08266]
103564269  ULK2; unc-51 like autophagy activating kinase 2 [KO:K08269] [EC:2.7.11.1]
103566601  ATG13; autophagy related 13 [KO:K08331]
103561296  ATG101; autophagy related 101 [KO:K19730]
103565579  PPP2CB; protein phosphatase 2 catalytic subunit beta [KO:K04382] [EC:3.1.3.16]
103543523  PPP2CA; protein phosphatase 2 catalytic subunit alpha [KO:K04382] [EC:3.1.3.16]
103557437  ATG9A; autophagy related 9A [KO:K17907]
103540938  ATG9B; autophagy related 9B [KO:K17907]
103559152  ATG2A; autophagy related 2A [KO:K17906]
103541087  ATG2B; autophagy related 2B [KO:K17906]
103567550  WIPI2; WD repeat domain, phosphoinositide interacting 2 [KO:K17908]
103558474  WIPI1; WD repeat domain, phosphoinositide interacting 1 [KO:K17908]
103544117  beclin-2-like [KO:K08334]
103550344  BECN1; beclin 1 [KO:K08334]
103543294  phosphatidylinositol 3-kinase catalytic subunit type 3-like [KO:K00914] [EC:2.7.1.137]
103550794  PIK3R4; phosphoinositide-3-kinase regulatory subunit 4 [KO:K08333] [EC:2.7.11.1]
103546967  ATG12; autophagy related 12 [KO:K08336]
103548870  ATG5; autophagy related 5 [KO:K08339]
103555977  ATG16L1; autophagy related 16 like 1 [KO:K17890]
103540772  ATG7; autophagy related 7 [KO:K08337]
103557909  ATG10; autophagy related 10 [KO:K17888]
103557587  ATG3; autophagy related 3 [KO:K08343]
103553031  GABARAPL2; GABA type A receptor associated protein like 2 [KO:K08341]
103557741  GABARAP; GABA type A receptor-associated protein [KO:K08341]
103560603  GABARAPL1; GABA type A receptor associated protein like 1 [KO:K08341]
103542546  ATG4A; autophagy related 4A cysteine peptidase [KO:K08342] [EC:3.4.22.-]
103557295  ATG4C; autophagy related 4C cysteine peptidase [KO:K08342] [EC:3.4.22.-]
103562412  ATG4D; autophagy related 4D cysteine peptidase [KO:K08342] [EC:3.4.22.-]
103555583  ATG4B; autophagy related 4B cysteine peptidase [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   
LinkDB

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